RnoINT0029012 @ rn6
Intron Retention
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24593172-24595709:-
Coord C1 exon
chr6:24595641-24595709
Coord A exon
chr6:24593248-24595640
Coord C2 exon
chr6:24593172-24593247
Length
2393 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGCTTCTTTTCCCCCCTCAGCAT
3' ss Score
8.83
Exon sequences
Seq C1 exon
CTGAAAGTGAATGGGCGGCTGGATCGGGAGGAGTTTGCAAGACTACAGAGTCGCCTGATCCACTGCCAG
Seq A exon
GTATGATCACATTCACTATGACACGACTAACGCTCTTATTTAACCCGGGTGAGCAAATGGTGATTGGGTGTCCCACACCAGGGTATGAAAGGATGGGAAACATCACCCTGCCCTCAAAGTCATCTCATATTTTGTTTTGGGAGACAAACAGACAACCAAGGCCTGAAATGCCAGAGTGGCAGGATGAAGAATGTTCTATGAGGCTGGGGAAAGAGGTTATCTTGGACAGTGTCTAGAACTGCCATGATATATATTGAAACACCCATTAGTCAGAACCCATCTCTTTCTACATCAATGCTTCTGTGGAAGGATCTACCAAAATAAACACAGTTGGCCTACGGGCTGGGTATGGCCTCTATTGTCCTCAGGACAAAGTCTGAATGCTTCAAAGCAGCACACAGACCTCCTGAGTTAAGTCTCTATTTTTAAGTCCAGAAGAGGCCATTTTTAACTCATCCTGCTTCCTCTGAAACTCAACTCTAAGATGCCTTGCTGTTCCCTATAAACGCCGAGCCTTTGTTCCTCTGCACCCCCTTCCTCCCCCATCCCCATGCTCTAAGCCTGGCCATTGCCCATCCATCCTAAGAATGTAGGCAGCTGCAGACATGCCTTCCCTGCCAAGCCTTTCTTGCCAGTCCCTATGACCTGAGTCCTCACCTTCTAGCGAACACCTGTAGGGCAAGCCACATTGTGTGCCTTAGTATTTTGCACTTAAGAAGAACTTTTTCTTATTTTAAAAGTGATGTCTATTGATAATAGAAAACATAGGTGGGAAAAATAAACCTAAAAAAGAAAACATTAACTTGCCAAAGGAAAGTATTAAGACCCAGTTAATACAAAATAAAAGTATAATCAGGCCAGGCATGATGGCACACATCTGTAATCCCAGCAGTTAGGATGCTGAGGCAGGAAGATTATGAGTTTAAAGCCAGCTTTGGCTAGAGGAAACCCTATGTCAAATAAATAAATGAGTGCATAAATAAATAGCATAATCAGCCATATACACGTATACAAACTGCTTTAAAAAATAAAGAGCACCAATATGTCATATGACTAATCATGTCACCCTCTCTGAACATTTTGAAAGGCCAAATCAGTAGTCCTATGTGGCTATGCCAAGATCCTTGACAGGGCCAGGGCAGGGGGCGGGGGGAATTTGACTTCTTCTCAGACAATAAAATGTTAGACAGGAACTTCCTACCATTACATTGCTGGGTCCTCCAGGGCAAGCTCTTCCCCATGTTCATCTTGCCCCCCAGAGACCTCCACAGTGTGTTTAATATAGCAGCATTCGGAATCGCCCAATAATGACATAGCTAGTCAGCTACTAAATGAACAAGGTTGTGTAATAGAAACCACTTGGTGTCTACCTTCAAACCTACCAGAAACCAAATAAGGCCAAGAGAAGGCTCTCAAGCCATCATCCTACAGCCACTGGCCTACTCCCACCCCCACTGCCAACCCCACCCCACAGTTGGCCTTGCCTTGCATATCTGGGATTTGCTATTTTGACGTGGAAAAGCCACTGTGAGGCAGCAGCATATAGATGGCAGTCGGCCGCTCTCTGCTCAGTCCTGGGCAGCTGCCCATTTAATCCAAGACCAGGTCTGCACCTGCCAGAGGGTTAATTTCCCCATCTAGGAAGTGTGCTGCAGGTCAGGGTTACAATGAGCATTATGTAGAGAGAAAAAGTCTCCAGAAAATGTAAGAGTCAGTACAACAGTGGCTGCTGCTGCTATAGTCACTACCTCCTGCACCCATGCTTGGGCCAGGACACAGTTCTAACCTGCTTCTGGCCTTTTCTATGTAGAACTCGCTAATGCACAAGCGAGGGGATTTGTATGTGAGCGTGCACACTTAGGAATCAGTGAATGATAAGCACAAAGGTATTAGTAACTGATCTGCACTTTATAGATGTTTGTTCATTGGCTTCTTATAACAAGCCTAGGAGGTGGGCACCGTAACTAGCCCTGTACCTCAGATGAGGAAACTGAGGCCTAGAAAGATGTGGTAACTTGGCGAAGGTCAGTTACAGAGCTGGTCATTGGTTGAGCTGGAGCTTAAACCACAGCATTAGGAAGGTTGGAAAGCGCTGCTATAGAGAGACCTTGTGCTTCTCCAAAGACAGCTGAATGTCCCTTTTGTCTAACGGGAGAAGAAATGGAAACTGGTTGGGGGAGGGGAACTTTAGGCCCAGTTGTGAGCAAACTGATGGACTTAAGGAGTATGGCCATCCCTGCTTGCCCCTTCCCTGCTCTACCTCTCTGTAAATTGGTTGGCTTCTCGAACACTTCAGTAAAAAACCTCCTCTAGAGGTGAGGAATAGACTTACAGGACCTCTCCCATCCACATCCTCCATCCCCACAGCCTTCTTGCTTCTTTTCCCCCCTCAG
Seq C2 exon
CATGTTTTCCAGCACATCCAGAGGAGCCAAGGAGTTCTCCGCAGCTCGGACTTATGGGAGGTCATAGAGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375:ENSRNOT00000047853:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(26.5=78.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]