RnoINT0029020 @ rn6
Intron Retention
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24620967-24627628:-
Coord C1 exon
chr6:24627492-24627628
Coord A exon
chr6:24621142-24627491
Coord C2 exon
chr6:24620967-24621141
Length
6350 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CCTGACCTCCCCCTCCCCAGGCT
3' ss Score
9.08
Exon sequences
Seq C1 exon
TTCTGGCAGTGTGGTCAGTGGGTGGAAGTAGTCATCGATGACCGCTTGCCTGTCGTAGGCAACAACTTCTGCTTTGTGCATCCTCGCAGAGGCAACCAAGAATTCTGGCCCTGCCTGATGGAGAAAGCCTATGCCAA
Seq A exon
GTAAGTGTGGGCAAGCCTCTGCCTGCCCTGTGTCTCACCCTCACAGATGTTTCCTGCCAGCTGGCCCCGCAGCTTATGAATTCCTTCTGGATGCAAGCAATGCCCTGGGTGTGGTAGCCCACACCTTTGATCTCAGCATTAGGAAGCTGAGGCAGGCAGATCTTTGAAGCCAGCAGATCGTTGAACCACCTGGGTATCTACATAGTGATACCCAGGGCAGCCGACTACATAGTGAAACCTTGCATCAAAACAAATGAACGAACAATGTGCATTTGAGCATCTGAGATTTGGTTACCAAGGGAAACAATCTAATAACTAATTGCCAAAGCAAGATTTGGTCCTGGGGCTGTGAGGAGAGACCCACAGACACATAGTGAAGTTTGGAATAGGCAGCTCTACGTTCCTGTAACATGGGTGATAGGCAGATATAAGAATCCAAATGAAATACGGCATCTGAAGGAGAATGATTCCAGGATCCTCCCATGGGGGTTAGAAACCATGATGCTCACGATCCTTCTATAAAATGGAATAGTATTTACATATAAAGTATACACATCCTATATGCCAAAATCATCTACATATATTATATATAGTATCTACATGACATAAGTCCTATGCAAAAAGTTGTGTTTAGGAAATGATGACAAGGGATGTTTATACATGCTCAGCACTGACGAAATTGGTTTCCAACATTTTCAATCCATGCTTGGCTTAATAGTGGGTACAAAGGCTTCCAGAGTCAAAGGATTGACTATAATCCTGCTTGTAGTCTGACTGGGGGATAGACAGGGAAGTGATCCTGACTCCCTGGCCAACAGAGAGAGAGAAGCAGAGGCTGCTGGAAGAGTGACTGATGTTTGAATGAGGGTAGAAGGATGGATAGGACTCTACAGCAAGGGAAGAGTTATGTGTAGGGCGAGTGAGAAGGAGACAGACAAAAGCTTTGGAGAAATACTTCAAACTGTGGTCCAAGAACTGAGGATCGTGTGTGGCTGCTATGAGATCACATCTGGTGGGGGATGGTAGATGAACAGGACTTGTTCCTTCTTATGATCCACACAGGATGTTCGGGGACAAGCTCAGAATTTGCGTGAACCCCAGATCACATGTTTTCCTTGGGCTTCAAGAGTTGTTTATTCAGCAGATGCCCGCTGAACATTTTGCCATATGCCAGGCACTGTGTTTGGCACTGCTTCCAACACTTGAGCAGTCTGGCTCAAGTGATTATGTATAATGATATTCATGCGCACATCTATACAGAGCAAGGTGCTGTTCTAAAGACTCTTCTAATGGCCAAGAGAGATTCAGTCTTTCTACAACAAAAGGAAAAATGCAAATTTTAAGATAAGACAGCATCCCTCTATGCTCTTAGACTGAAAAAGCCAAAGCAAGGCCAAATGACGGACCTATGTGGGCATCTAAGAAACACACAGGGTGTGCCCTAAGGAAATGTTCTGAAGGCCACTTGACTACTCTTAGATTACTCCAGGCATATGTCGCATCCAGCAAGAGCACTCTCAGAGGGGCTCTAAGAGGACAGGCTTGTGAAGTTCCCAATGGCACTGCGGGCATGGTGTGAAGTATTTATGCCAGGAGACGCTGGTACCGTGACATAGGTGTGCTATACGACAGCCTCACAGCAGTCAGAAGCCACAGGTGCAATCTATGCCCAGGCTGATCCTCAGAGGGTGAGCTCTGAGCAAAATGGGCAAGAGGCACTGAGTAATAAAATACAACGCCATTTATGAGCATGAAAATTATATCCACTGCAATATGCATTTTATATGAACACAGAAGAAGCAAACATTGCAGAGTTAGCATTCTGAAATGGTTGTGAGTAGAGGGGAAAGAAAGAAGGAGAAGGGGTGGGGACAGAGACAGAGACAGAAAAAAATGAATAAAGGGAGGAAGGAAGGAAGGAAAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAGCCCAGCAGTCTGCCTGATTCCCAGTCTCATCTTTGCCCCTTCCACTAACTTCACCTTCCTCAAAATACTCTGCTTCTTGCACCTCATAGAAGAGCTTGGCCTCATGGCTTCTCTGTCTGTCTCTCTATCTCTATCTGTCTCTTTGTATGTCTCTGTCTCTGTCCCTGCCTTTCTGTCTCTGTCTCTGTTTTTCTCTTTGTCTATCTCTTTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGACTCTGGCTCTCTGGCTCTGGCTTCAGTCTTCTTTGACCCTATCTCCTGTTCCTTTAAGGATTTCAGTTGCAGAGGCAATATTGGGCCCCCACTGGCTTTCTCAACCTTGTCCAGGGCTCAGTGGGCACAGAGCCCTGTGAACAGGAGCTGTGGACAAGACTTTCCCCAGGATGGCATGGGCACAGACATAGAAAGCAACACTTCACAGAAGGACAGAGGGGATTATGTAAGCAGACACATAGAGAACAACACTTCACAGAGGGAGGCAGGGAATCATCCAGGCAACCCACATACTTGAGGAGAAAAGGAACAGAAGAAAGGGTTGTAGGGTTGAAAGGGTCCACATTCACCCAAGAAGAAGCTGAGCCTCCAAGCCATCCTGAGACCATAGATACAAGCATTTGAATCCCTTGATCCCTTAGTCACATGCCTGGTACTCCATGCCACAGGGCTGCAGCCTGGCTGGGTTCACAATCTAGATGAAGATGTTCCTCCGGACCTCTTTACGTGTATTCTGTCTTTCTTTCTTTTAAAGGCAATTTGTGAAAAACTAAAGTTGTTTCTCTCTTCTATTGTTGAAAGGAGTTGTGCATTCGTATTGGAAAAAGAAGGCCAGATAATAGCCAGGGCTGTTGAACCAGAGCAGGCGTTCTGGGAGGTTAATTCACTGCTAAGCTACTTACACAAACAATGCCATTATCTTTCCAGGATAGATCCCACTCTTATCACTTGTGGGCCTCATTTCTCCCCCTATATACAAAGAGGTAGCCTGGTGCTTCACTGGGAGAATTAGAAGGCTCGAAGACGGAAGTGATGACTTTGACCCCATTTTGTTAAATGGCCGACCTAAAGCAATCATTCAGCTTGAAAGGAAATGGAAGACTAGGCCCAAATCTCACATTCTACCGCCTAAAGAAATCTAGATGGGGATAAAACGTTTCAAACTATTAAAGCTATTTAAAAGCTTTGCCCCCACACCCACCAACCCAAGGAGGAGAGTTACAGAACACACAAGCGAAGGCTGGATTGCAGAGCCAGAGAGCTAGTAGAGGCCTCTGTGAATATTGAGTCCTCCCTCTTGTGAAGGAATAAGAAAACTAAGGCTCAGTGAGGGTACATTGCTTGCCCAAAGTCACACAGTGGTCCGGACCAAGCTGAGCCAACACCTACCTCTGAAGTTACTTTCTTTCTGCCAGTTCTTGATGTTATCAGTGCCACAGGAGGAGATTGGTCTTCTGATTTGGTGTCTGACACAGGGACCCCCACACAAACGTGGAGAGCACAGCTGTCTCTGTAAGAGGCCACTCGCCCTCTGAGGTCATAGAAACAGCCCAGTGAACATGTGGACTCCCAACTCCTACTTAACACCATGCTGGGGAGTCTGGAAGTAAATTAATCAGATCATCCAAGTGTCAGGCAGAGCAATCATGTTTGGAGATTAAGGAGATTGGGACAAGATCTGTCAGGCTTCATATCAGACATTGCACTGTCTGTGGGTAAAAATTTCAGCAACTCAGTCTCCTGTAGGGCTGAGGCTTAGACACCTAAATTCTTCTTTCAAAGCGTGAAGAGAGTCGTTTCCCCAAGATGATGTGAAGTGAGGGATAGGACAAGGCTCACTCAGAATTCCTCAAGTTCAGGTGACAAAGAAAAGTGACAGCTGTGTGGTGAGCACCTCTCACTCTTTCTGTCTTCATCTCTCTCTGTTTCTCTTTCTCTGTCTCCCTTTGTATCTATCTCTCTGTCTCTCTTTGCCTGTTTCTCTCTTTCTCTATCTCTCACTTCATCTGTCCTCTGTGTTTCTTTCCCTGTCTCTCTCTTCATCTGTCTCTCTCATTCTCTCTCTCTCTCTTTCTCTTCTTCCCTCCCTCCTTCCCTCCTATTCCCTGTCAGCTCAGAAGGATCCATAAGCTTGCATTTGTGAAAAAGTTCCTTGTCAAAATACCCTACTACTGCTATTGGGACAGGCTTTGCAGTCATGGAAGACAAACACTGAGAGAAGGATCCGAAAGACATGAGGAGGGGTGCTGACTGTGGCAGAATAGACTGGGAGCCCTTCCATTGCATGTGGTAACAGCAGAATAATGTAGGTAACAGATCTCATATAAATCCCAGAGCCAACAAGATGGGGTACCTCAGTGAAGAGGGGTCAAAACCCCCAGGTGCTTCTGTGGAGCAACCACCTTGTGGATTCTGCTTAGAGCTGGAAGGGATCACAGTCAGGATGGAGTGTACAGTAAAGTACTAACAGATTCTGGAATGGTCCTTGTGAAATTTGCTGTCCTCAATAAGGACATGTGACATTAACAGCCAAGTCTTCAGACCTAGGTGGGCATAGCCCTGATTAAAGGGAACCTATGCCATTGGCTGAGCAAACACTTCAGAGATAAAGACTTTCAAGCCAATCAGAGCCTAGGGTCACAGGGAGGTGAGGGAGGGATAAGATCAGAACTTATTTTAAACAATGTGGGTAAGTGTCACATGAGTGTCCCTGTAGATTTGCTCTTTTGGTCTGTAGATTCTTAGGTTTCCTTAGTAAGTTTTCTAAGCCACCCTTGGCATGTGTGTCTGGGACACAGTGGCCACATGACCCATATTTGCTGACATGGTTTTGCTGGCACTCTATGTAGTTTGAGGAAGAGAGTGGCCAGTGGCTGAGGTAGAAAGAGGTTGAGAGAGGAGTGTCTGGGGTCCCAGTGTGACCCAGTTCACCCTACCATATCTAGTAGCAAATCCAAAAACAAAATAGGAAGGGTCATCTCCAATTCAAATACCTTGTTATAGACAGGAGGGAGAATGGCCCCAGGACTGGACTCTCATTTTATTTTATGGTAGTCGAGGAAAAGAAACATGGGTAGGATCATCACTCATGACAGTCTTGGCATCTGCTTTCCAATGGGAGACAGTTGCACAGGGATCTGGCAGGGACAGAGGGAGGCTCCTACATTTGGGAGACTGCCCACAGACTTGCCAAGACTGTAGTTCAGGAACCTACAATTCACCACTGAGAGTCTGACACTCTGGCCCCAACTTTAGTAATTGTTCCAGTGCCTTTTCTCCCAGTGACCACAGACTTCTTCCAGCCCCACTGTCTACCCTTCTAGATCCATCCATCCATCCACAGGCTCCAGAAGCTTCTCCAATTTGATATTTCCTCCTACAAATACCCTTGACATTCTCTTTACCTGTGTGAACCTCAACTCAGAGTCGAGGTCACCTAGGCTGGGATCGGCTTGTCTCCTCCCATGTTATTTATCTGTTCTTGTAGCAAATAGATACCTTAGGAGGTCATTGACATGTGATCATTGACAAGCCCTTCTAAAGAGATTATGTCCTGATGCCAAGTGCTGATGTAGAGGACGGAATAGATCTGGAGCAGGGAGGAGGAGACAAAGACCGTTGTGCCTCATGATGCTGGCCAGAGATCCTTCTCTATGCTGCCCATATTTGCTAATGATGCTTAACTCAGTGAGGCATATGTAAATGTCTTGCTCCTCCAATAAGCAAAGGAAGCCTGAGAAAAAACCGATTCCTTCCAGGTGTTGAGAGCTTGTGATGGGGAGCCAAGGATGGAACCTTGATAGTGTGTGATAGAGTCGTGAAACAGGCTCAGAATTGCTAAGCAAAGCCCTGCCATCACAAGCTAGGGAATGATGATCAGGGTTCAATTGGTGAAAAGTAAAAGCAGGAAGAAAGCAAGGCTGAGGAAATGAACCTAGGTATTTCTGAGGTACAAACACAGAGGCAGAAGGCCAAAGGCTGTGGGAGTGGGAGAGGTATTTAGAGTAGAGATCTAAGGGTATGTATGCCCAGACTTATCTCTTCCTGTGCTGACTTCACTAATGCCTTTCTCCCTCCTGATTTCCATGAAGAGGAGGGGCATTATAAAAGCAAGAGCTCTGGATCAGTTTTCCCAGAGTGAGAACAAAGGCTGCTCATTGCTAGGTTGAACTTGGGTTTGTTAATTGTGAGTTCTTTGATGGTGAGAATCAGGTCTGTAGATGGAGACGTCCTTCAAATAGGGAACATGTACAGGGTTGATGCGCAAGCTCTTGCTCCAGGAATAACCTGACCTCCCCCTCCCCAG
Seq C2 exon
GCTGCTAGGCTCATATTCCCAATTACACTATGGCTACCTTCCTGATGCGCTGGTGGACCTCACAGGAGGAGTGGTCACCAGGATCAACCTGCACTCCTCTCCCTCTGACCTATTGATGGTAGTGAAGACCGCAGTCCAGACAGGCTCAATGGTGGCCTGTGCCACCCCAAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375:ENSRNOT00000047853:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(15.2=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]