RnoINT0048697 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145852888-145859161:-
Coord C1 exon
chr6:145858991-145859161
Coord A exon
chr6:145853124-145858990
Coord C2 exon
chr6:145852888-145853123
Length
5867 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATTCAACTTTGGTTTCAAAGGTT
3' ss Score
5.92
Exon sequences
Seq C1 exon
TCAGAGAAGATTCGATGGGGTCAGTCCATTAAGTCTTTTGAAACTCAAGAGAAGACACTGTGTGGAGATGTGCTGCTCACGGCAGCGTTTGTGTCTTACATTGGGTCCTTCACAAGACAGTATCGCCAGGAACTGGTGGACTGCAAGTGGATTCCATTTCTTCAGCAGAAG
Seq A exon
GTGAGGCCCATCCTTCACTCTGTCAATATGAGAAAATTGTTGCAAAGGAATTCCATCAGTGACCACTGTATGTGTGCCAGGGTACCTTGTTCCTCTGTAGTAGCCTCTCTAACATCTTGTTCTGTTTATCTCATGTTAATGATGATTTGGACCTGGAGGTGAAAAGAGCATAGACTCGTGGTTAGAGGGTGCATTTCACAAGACAATAGGAAGCAGAGTCAGCGTGTTAGATTATTGAACAGCACGCAGCGTTTTGTTTTCTTACTAATCTTGACATTAATGAACGAGTTTCCAAGATTACCTTCAAACTAAAGTGCAGCATTTTGTAAAATGACATTTATAAAAAGCTTACTGTACATTTGAACCATGAAATCCATAGATAAAGTCAAAGGGTTGAGATATTTGAAATTCTGTGGCTTAAGATCTCCCATGTGTGGTTGAGAAAACAGGAGCAAAAATTTTAAATTGATTTGATTTCCCACCAAAGAGCAAGGAGTCAGCCCACCTAACATCCGGACCACAGTCTTCTTGCGACACCACCCTTGTGATTGACCAAGTTGCCCCCAGTCTACTTACCCTTCACTAGCATGGCAAGACATCCTCAACCCTCTATGTGTAAATCTACACCACAAGGTCCACAGCAGCTCTTCTCACAACCAACTTCATGCCAATGGAAAGTCGGTGATTTAAAGGAAATCGATGTTTTAGGAGAATCTTATCCCTAAAGGCACATAATTCATTGTTTTCATGGCATTGTAACTGAATTATTTCACATGCCTATAATCTCAAAACTTACTTGTATATTGAGGGCTTCTTACATAAAATTATGCGTGTTATTCTCTAAATTCCAAGATTGGTCTTTAAATATCATCAAGGATCTGATTAGGTATGAGTCAGTCTGCTGATTTTGCCCGGTTCTTAGGTCTTTCTGAGTTTTTAAAGTGGTTGGTGTCTGTTTCTCCTTTTACCTTTTTTATCTTCTTTTTTTTTTTCTTTTTTTCCGGGGCTGGGGACCGAACCCAGGATCTTGTGCTTCCTAGGCAAGCGCTCTACCACTGAGCCAAATCCCCAACCCCTCTTTTTTATCTTCTTTGTCTTGTCTTCTCCATGCTTGACGCTTCTTGTGTTTGAGTCATCCTGGAACCACTGCAGACTGACAGGTACCCTTTTTAATGCTTCCTTCTTTCTATTCTCACTGTTAGCAGTAATGAATTCCCATTCTTCCAGAATGATGAGGAAATTCACTGCTAACATGCAAGCTATTGAGTATTGGCTTTATGGTATACCTGCTCACTTGTGCTGAGATATAAATGAATGTGCAAAATCAATCAGTGTTTTCTACACTAGAAACTTGCTTTTTCCTATATTAATTTTAAAACTGGTCCTCAACTGCTAGTCTAATGTCATTTGAGCTTCTAGAAAATTTCACATCAGATGGTTTTTATTTTTCCCCGTTTAATTCTAAACCTGGGAGTCTATGAGAAAATAAACTGTTTTGAAGAGATCATAAAGATTCTATAATTAACTAACTTGTCCAAATGATCCTCTTAAATATGTGGCCAAAGCAAAATTACAATTTCCATGTAATATATGCTAATAAGTATTAACTTCCACTGAAGCCTGTTTATCTTTGACCTGAAGATTCTCCCCCAGGAAACCCCATGTGGTTTTCAATCACCACAGCTCTGTACCCTTAGAGTTTTTTAAGTCACCATCCGAACAAAGACAGTCGTTAAATGGACCAGCCCCATTCTCCTGCTCATCTCTGGGCATAGCTGAACTAAAGGACTCCACTCCACGCTTTGTGAGAAAAGTGAGACTCTGTTGGGAGGAGAGAATCTCCTGTCTCTACAGGACCCAGCAGAAGGCACCACATAAATGTAACAAGTACCTGTCCTTGTGGAGGCAATCAACGGCCATTTCTCAGCTGCTTACCACAGAGAGGTGGGAACTCATATCCTGGATGTGTGCGGTGGCAGTGGCAGGGTGGCAATGGCAGATGGTGGTGGAGGTAGGAAGAGAAGCTGTGATAGCTCATCAATGCTACCCTGAATTGTTTTTCCTAGCAATTCCTGTATTTCTCCTCAGTATATAGGAGCTCTGTGTGTCTGTGGGTATCTCCTGCCTGTCTTTGGTCTGTCAGTTTGCCTGGGGGATATCCTAGGCCATCTATTGGTTTGGACACAAACCTATTATCAAGTATGATTTGTGAAAATTATCAATCTGTAAATCAAGCATGTCATTTATTGACAACCTAGACATTGGTAAGGTAACCTTGGAAGAAACTCTCCTCTTAACATTGAGAATTGGTTGTCTTCAAATGTTCTCAGAAACGCACATAGATTGAACAATACATACTATTTTAATATGTATTATTTTTAATTTTAATATATAATTTAATTTAATATATTTAATCTATATTACTATATAGATTTTATGTACATAGTCTAAATGTATCAGTGGTCCTGGGTTATTTAATGAATAAATTCAAGAGCCCCAAGGAAAGTTGTGTTTTCGCTTCACTCAATGATTGTACAGTTTGTTGAAGGATAAGGATTTTAAGGACAGCCAAGAAAATTTTAAAATAGAACCATAAGATACACTTGTCTTTCAAGATATTAAAATATACTTTAAAACTATGGAATTACAACCAAGTCCTTCTGTAGGGGACACAGAAAGCCAGAATAGACTAGTACTTAAAAGCATGCAAGGACATGAAGTGATTTGATGTCTGAAACATGACAGTGTAGAAACATGGCTAATCTATCCCTGACCATTGTTAAGACTCATTTACTCTGCCTTCTGTGTGAATCCTTAAAGAGCCAATCTCTTCTGCCCACTCCTGGTCACTCTAGATGAGCTCAGACTATGTGGCCCCTGTACGGGAATGTCTCAAAATTGCCCCAGATGTAGTAGTATGATCTCCTGACTTGCCCTTAGAAATTCCTCCACTCAGCTTTTCCTGTGTTTATTGGCAGCTCTCTGCCATTACCTCCATGTTCCCACATCTACACCCAATCCATTCAGGAAGCTGTATATACTGAGAATCAAGTGTTTTCTGCCACTTGTAGTACGGCCATGCTGCCACAAGCCATCATATTCTCTTACATTGCTATAAGAACCCTCAAACACCTTTCTACAAGTCTAGGATATGTTGTCTGTCCCTTAAATTGCCTCTGAATGTATCATCTAGTCCATTTTCTTCTTAAATCCCTTGAATGATTCTCCATTGCACTTAGAACAAAATCCAAACATTCTACAAAAGCTTCACACTTTTACAGGTTGTTGATTGCTTTACTGGCTCTCACTCTGACTTCCTTCCTCTTCTGCTCTTGTCTTGCCATCCACTTCATAAATCTTCCAAGTAGTTCAACCTCAGCCCTTTGCACTGTTTCCTCCTCTGCCTAGGATGTCTTCTCTGAGGACATCCTGCATCTCCCACCCATCAACTCCTTTTTCAATTAAGCTTATCCAAAACTAGATAGGATCAAAACCCCATCTCCCAGCATGCCTCTCTCCTTTAGCACAGCCCTTGCTTGTTCGATCATTTTGCAGTGCTAGGTAGCAAACCCAGAAGAACGTCAGATAGTTTGAGTCTGGATGTTAGAAGTTAAAGGGAAGTGTAGATTAATCGGTGCATCATTCTATCATTCTCTTATGGAGGTGTGTTGTGTCCCCCATAATTCTGTCATATAGATGACATTACACAGAGGAGTGGAGGTGAGTGACAGAACTCGTAAAGGTACATGTTCTAACCCCCCATTCTCCATCAGGAACAGTGGGTTGAACTTCATCTTGGCATAGGGATTGCCCAAGGGAGCGGAAGTCTTCATTTATCTTGACTATAGTCACCATGATGAAGTTTGCCTCAAGGTCTGACATGAGAAGACAGAGATACTGAATCCAGCCAGGCACAGAGTTTTCAGGCAGATAAGCCAGAAGTGAAGGAAGCAGGGAGTTCATGGGGTTAGCAGAAGAAAATTAAAGCATAAGAGGCTAACTAGAAACCGGAGTTTAGCTGAAAGTAGATAAAATATAGTAAGATACATCAAAACTAAACAATTAAAATTATGATTTAATAACCCTACTCATGGATATATGCCCCCAAAGAAATTAAAGTAGAGACTCCAGCATGGTTGCACACTCCGGTACCTAGAAGTGTCACTAATGACAAACCAAGAGGTGGAAGAAACCTAGGGACAGGTGAACAGATTTCTTTCACGTGGCATGGGCATAGACTAGAATATCATTTGACATAAAACAAGAAACCTGCAGCATGGATAAGTCCAGTAGACATGATTCTGACTGAAATGATGCTGGCATAAGGACAAATCCTGTAAGAATCTACTTGAGCGAGGCAGAGAAGTCAGATTCATAATGACAGACACAGAAGTGGTAGATGCCTGGAGCTGGAGTGGAGGGGATGGGGGAATGTTCTGAATAGATAGTGAGATTCAGTTTTGGGAGGACGAGAAAGGTCTGTAGATGTAGGTGGTTGATAGCCCCATGATACCATGATACTTATTGCTACTGGACTGTAGGTATTTAAATAGCAATGTTTATGTTGTGTATAACTTATTATAATGAGAAAGAAAGCCCATGGTAGGGTAATAGCCTAGCTGTCCTAAGGCTGTTAAGGTATGTGAAGAGGGAAGAGAGGTGCAAATTCAGAGAATTGGATTTGAAATGTCAGATAAAATAGTTTGATGTGTTCTGATATCCAGAGAGATAATATCACACGTGTGGAGGTCTGTGTGCAGAAAGAAGGTGTATTTTGAGGTCAAGAGCAGAAACTGCAATCATATACTAAAGACATGGTGATATCACACATGGAAAGAGGTGAATACAGAAAAAGGAAGATGCCTGTGGTCTCCTTGTAACCACACACTCCCCCAGGGTGCTACCTTGGACAGAAAATAGGTTCTCCCTATGCATTCAGGTATTTGAGAGTTAATAGCAAAACTTGGAAAGCCAAAATGCACCAGAGGGAAGTGATCAGTAAGGTGAAATGATACACAGGGGGCTGTACAACTGGACCACGTCAGCCTCTGAGCTAATGTTTCAGCTAAGGACGGCAGGGTGGTGGTCAGCATGACCTTCAGAGAAGAATGGCCACCCCTTCCCACACCCCTTTTTCAGAGATGGGAGCACACAGACTATGAAGTGTCTCCACTTAAGGAAACCCTTAAGTGAGGTTAGCTCCTGGGCCGTGCCTCTCTGGCCCACAATCACAGTGAACAAAGCTACAAAGAAGAGAAACTGCTTAACTGTGTTAATGTCAGTCGGAGCTGCCTCTGGGCTGAAGGGGAGAAACCTGCTGAGAGATCTGTTTAAGGTGTCATTTGACTCTAATAGACAGGCAGCCCGGGTTTGAGAGCTGCTGGGCTTGGGAAAGCCAGGTTTGGCTAAAACAGGAGGATGGGAGAGCAAGGCTGAGATTCTAAAGAAAACATGGGAAAGACTGTCAGGAAAAATGCCAGAAATGGGAAAAGGTTCCAAGACCCAGGATGGGGAGCACAAGGCTTTATCCCTGAAAGCTTACCATCTTGTCCATTCCAGTGAAGGTGGCATGGTTTCAGCAAACTGCACAGACTTGACTAGCCCACTCCAGAGAGGGAGGCAAGGTGGATGCAGTTAATAACGTAGGTCCTGAGTCCACAGCTGACAGGATTCTGAAAGGTCTGTGTTCAATCAGCTTCACAATGCAAGCTGCATTTGACTTCGAGCAGTCTGTGGAGAATTCACATGCGTCCCCCCGGCGACTTCATTTTCTTCTCTGGGCTTCGGGCTCATTTTCTTGTCTACCGCAATCAGCCCTTCTCCTCTGCCGTGCTGCTAGCTGATCCCATTCAACTTTGGTTTCAAAG
Seq C2 exon
GTTTCCATCCCAATAGCGGAAGGCCTGGACATGATTGCCACGTTGACAGACGATGCTACAATTGCCACCTGGAATAACCAAGGGCTACCCAGCGACAGGATGTCAACTGAAAATGCCACCATTCTAACTCACTGCAAGCGCTGGCCCCTGATGATCGATCCCCAGCAACAGGGAATTAAATGGATCAAGAATAAATACGGGCCTGACCTGAAAGTCACACACTTAGGCCAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:70
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(24.1=36.8)
A:
NA
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]