RnoINT0064001 @ rn6
Intron Retention
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12067016-12069096:-
Coord C1 exon
chr3:12068997-12069096
Coord A exon
chr3:12067095-12068996
Coord C2 exon
chr3:12067016-12067094
Length
1902 bp
Sequences
Splice sites
5' ss Seq
TAGGCAGGT
5' ss Score
0.17
3' ss Seq
TAAGGGACATCTCTGTTCATCAG
3' ss Score
-7.26
Exon sequences
Seq C1 exon
AATCATGCTCCCAATCGGCGATCTTCAGTGAATGTTTACCCGAGTACCCCAAGTCAGCACGGAGAAGAGGAGGCCGCCAGGCCGAGTTTGTTAGAACTAG
Seq A exon
GCAGGTATGTTTGATTCCACAGCTCCTGAGAAGGTGGTGTTCTAAGTCCCTTCCAAACTAGACAGTCCACAACCAGACTTATTTTTTTTTTATTTTTAGTTTTTTTCAAAGACAGCGGTTTCCTCTGTGAGCCCTGGACTGTCCTGGAACTCACTCTGTAAGACCAGGCTGACCTCTGCCTGCCTAATACTGGGATTAAGGTGTGAGCCTGCCTGAGCAGGAGCCTGTTGCTTTCTCATGGCTGTCTAGTGGACATTTTTCTCGCTGTGGCATAAACGCCTGACCAAAGGTTTCCCAGAGAGTAAAGGGCTCTTACTTCTTCTAGCTTTCAATCTGTCCCTGAGGAAGTCAGGGCCAGGAGCTCAGGGCAGGAACCTGTAGGGCCAGGAGCTGAACGCACGAGGAACCTGGAGGGAACACTTTACACCTCTCACTCTCACGGCTTGCTCACGTCTGCTCCAACACGACCCAGGAGACATGCCCCTGGTTCGGCCACAAGCTCTGCAGAGTGAGCTCCCATGACCTCCCATGTCAGATTGTTAATCAAGAAAACGTTCCACACCCTTGGCCCACAAGCAGTTCAATGGAAGGCTTTTTTTCTTTAGTATGAGGTTCCCTCCTCCCCACATGACCCTGGGCTGGCATCAAGCTGACAAAAAGGATTCCACGTGCGAGGCTTCATATTATTCTCAAAATTGTGTGGAAAGACAAAAGGCTTTGACAGCTGTGTAGTTTGGTTCCCTTTGCAAAAGTAATAATGTCTACTTGCAGGGGGACAGCTCTGCTGTCCAGTAATCTGTTAATAAAGGTGCTGTCCTTGCCTAGTAGAATCTCTGGTTGATGGGTTATTTTGAGCAATCACCAGATTTAACACTAAAACCCTCGCGATGCCTACAGCAGCAGTAGGAGAGGTCAGGGCCTCAGCTTGTGTGGGTTATCTAGGACCAGAGCTATAGGCGGCAAGGCACTGTAAAGGAGGAGTCTGTGATCAGTGGCACATGCTTCAAAAATATGTATCACCACTTTGTTAAAACACTAGCTGGCAAGCCATATGTAAGCTAGCACTAAGATTGGACACTAAATCCAGTTCTCTAGGACTCCATGTATAAAAGGTGAGACATGTGTATCCAGTGCGATTGTCCTCCATCCTCCTGCATTGCCTCCGTGCGCGTCCAGTATAAACTGACACAGTTGTCCTCATCCTCCGCTATTAACTTGACACAGTTGTCCTGCCCGTATAACTGACACAGTGGTCTCCCTATAAGCTGACACAGTTGTGCCTCCTAGTAACTGACACGCGCTCTCGCTCCCATCCCTCCATATAGACGACAGAGTTGTCCTCATCTCATATAACTGACACAGTATGTCCTCCCTATAACTGACACGAGTTGTCCTCTGGCTCCATATAATGAGCACAGTGTTTTGTCCTCTTGTTTTTTTGACATGGTCCTTTGTTTCTATACTGTGTATGTGTTTTTGTGTTGTGGTTGTTCTGTCTTCATATAGATCTGTGTCTGTTTTGATGTCCTTTCTGTACTTTCATCGTTGCACCCGTGGCATATCACACACAAAAATAGGTATGTAAACATTTTTTTATATCTTAAAATTTGGTCCCTCTTTAGGGGATCTTTGAGCTATCAAGATTGGCAAACCCTAGGCTCCTATTTTTCAGGCCAGTCCTTAGTTTCAGAAATCCAAGGACTAATAGAACTGATTTACACACACTAGAAACACTGGTTGTATATTGGGCCATAACCCTGAGTGGGCTTAACCATCTCCTTAGAGGACCTTCAACTTTAACCCCAAATTACTCTTGACTCATTGCTTTTTCTCAAACCTTAATTGTTCACCTGCTGACCTTTCACTGCCTGATCCCAAACCTTAAGGGACATCTCTGTTCAT
Seq C2 exon
CAGGCCCCTGAAGCTCAAGTCCATTGTGAGAGGGGATGCCCCATCAAGCTTGGCAGCATCAGGAATATGTAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044:ENSRNOT00000082696:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]