BtaINT0065557 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006948 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr11:98110251-98111585:+
Coord C1 exon
chr11:98110251-98110355
Coord A exon
chr11:98110356-98111510
Coord C2 exon
chr11:98111511-98111585
Length
1155 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
AGAGATCTCTGTTCTGTAAGGCA
3' ss Score
-0.24
Exon sequences
Seq C1 exon
AACATGCTTAATAGACGATCTTTCAGTGACGTCTTACCGGAATCGCCCAAGTCAGCGAGGAAGAAAGAAGAGGCCCGCCAGGCAGAGTTCGTTAGAATAGGACAG
Seq A exon
GTGGGTTTTTTTCTGACATCTGTTGTGCAAGACACAGAGTTGTGAGTCCATCCAAACCAGTTGGCCCTTCTGCGAAGAATGTTATGTTTGCACACTCCTGGAGGAGCTCTGTCACTTCTCTTAGGGTCATTGTGGAACCATAAGGAAAATTTTTTTTTTAATTTTATTGAAGTATAATTGATTTTCAATGTGTTAATTTCTGCTGTACAGCAAAGCGATTCAGTTATACATATTGATATTCTTGTTCATATTCTTTTCCAATCTGGTTCATAACAGGATATTGAATATAGCTCCCTGTGCTGTACAATAGGACCTTGTTGCTTATATGAGGAGGGGTGATGCTGGCTGGGAGCAGGAGGCCACAGGGCTCAGTCCCTGCTCCCTCTTGTCAAGGGAGCACATACCATTTGCTTGACTCCTGGGGATTTTCTGAAGAGTAGAGAGCCAATTTAGGGAAAGCACTTTGAACTGCCCCCTGGCAGGAGTCAGCACGGAGGGGGCTGTCCTCGCAGGAGACCCGGATTTCCCCCCTACCGCTTGAAAGCAGTCATCACAGGGATGTGGCTCCTAGGCATCACCTTATTCCAGGTTTTAGAGGAAGCCACTCCCTCTCTGCCTGGCTCCTTCGTGACATTAGTGTTTCTCGATTCTGGAGGTGACACAGCCTTCTGCCTTGGTCCCATGTCACAAGAGGGAGGAGAAGAGCTGTCTGCTGCAGACAAGATTCTGACCTGAAAGTGGAAGCTAATCAGCAAGGCAATCACAAAAGCTTAGCAGCAAAGATAACCTTTTCCCAAAGCAGGAGCCGTGTCACCGGGGCCTCCAACTTCGGTCCGTGTTCAAAGATAGTACCCCGACTCTACTTTCAGAGAATCTGATTCATCAAGTTTGAGGAAGGACCTGGGGATTTTTTTCAGTACTGGTGGTTTGGAAATCACTGTACTGATATACTGATCAGTTGAAATGACAGAATGCATTTGACATCATTAGATCCAGCTGACTCCTTTCCTTATCTTCAGTGATAGGGCAGCGTGGGAACCTGAAACAAGCCTGAAATTACTCCTGTTTCATTTTTAAAAGTTTTTTTCAAGTCATAACTGTTGATTCTTATGCTTTTACTGCCTGATAAACTGAAAGAGATCTCTGTTCTGTAAG
Seq C2 exon
GCACTAAAGCTGAAATCCATCGTGAGAGGGGATGCTCCATCAAGCTTGGTGGCATCAGGGATCTGTAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006948:ENSBTAT00000009123:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development