GgaINT0125909 @ galGal3
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11160653-11161512:+
Coord C1 exon
chr17:11160653-11160757
Coord A exon
chr17:11160758-11161437
Coord C2 exon
chr17:11161438-11161512
Length
680 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTTAATTAAATTGTATTAGGCA
3' ss Score
4.37
Exon sequences
Seq C1 exon
AACATGCTGAACAGAAGGTCCTTCAGTGATGTGTTACCAGACTCCCCAAAATCAACACGGAAGAAGGAGGAAGCTCGGCAAGCAGAATTTGTCCGACTTGGTCAG
Seq A exon
GTAGGATCAATTTAGGAAGTGTGCATTTATGTTTACAAGACTGTGTCTTAACTTTATAGGAACACTGGATTTTTGTATGTTGTAAATATAAACAAGGAAGATATATATGATAACTTAAATAGACTTGTTATCTGTCTCAATGAAAATATTCATACAGTATTTCTCTAGAGTTTTTAGACCTTTTAGAATCAGCATGCTTCTAGTTATTTGTGGCTGAAGGATTAATGTTGCTGTGACTTTGTGCATATACACTGCCAGGGGCATAGTGCTAAATGTATAGTTTGATTGAATGGCTCATTATGTGGTTTTGCAAGTGTAAGGCCAGCTTGGTAACGGATAGAAGGATCTGTTAACCAGCTATAACTACTTGAATTGTATAGATGGCCAACTGACATCATTGGAGGTGGAGGCTTCTGTCTATTACTATGTTGGACACTTTGTGTTTTGAATTTTCCATTTTTGTAAAAGCCATGTATCTTTTGTCTGGGAAGAAAGTCTAGGAGCTCCATAGTGGTTAGTGCAGATTTTGTTCAGGACATAGATAATTTTCTTTCTTAGTTACTGAAAATGTAATAGAAAATCCAAACCATAAGCTACTTTCTTGTCCTAAATTATCTGTTCTTTATAGTCTTTAACTAGTGACAAAAACTTAAAGAGATATTTTAATTAAATTGTATTAG
Seq C2 exon
GCACTCAAACTGAAAACTGGTGTGAAAGGGGATGCACCAACTACCTTGGCAACTACAAGCTTTTGTAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000038633:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.505 A=NA C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]