MmuINT0067602 @ mm10
Intron Retention
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:33015186-33016789:-
Coord C1 exon
chr2:33016685-33016789
Coord A exon
chr2:33015261-33016684
Coord C2 exon
chr2:33015186-33015260
Length
1424 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
GGGATATCTCTGTTCATCAGGCC
3' ss Score
4.56
Exon sequences
Seq C1 exon
AATATGCTCAATCGGCGATCTTTTAGTGATGTTTTACCGGAGTCACCCAAGTCAGCACGGAAAAAAGAGGAGGCCCGGCAGGCCGAGTTTGTGAGAATAGGGCAG
Seq A exon
GTACGTTTGACTCCACAGCCCCTGAGAAGTGTGGTTGGTCCCAAGTCCCTCCAAACCAGACACTCCACCACCATACTTTTCCTTCTTTTTTAGTTTTTTTCGAGACAGGGTTTCTCTGTAGCCCTGGCTGTCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTCTGCCTCCTGAGTGTTGGGATTAAAGGCGTGAGCCGCTAGTGCCGGCTGAGGCTGTGTTTTCCTTGCTATCCTGCTGGCCATTCTTCTGCTGTGGATAAACACCATGTCCAAAGGTGACCTGGGGAGAAGAGGCTTCACTTCCTCTTAGAGCTTACAGTCCATCACCGAAGGAAGTCAGCGCAGGAGCTCAGGCAGGAACCTGGAGCCGGGAACTGAAGCAGAGGCCATGGGGGGCACTACTTACCGCTTCACTCTCCATGGCTTGCTCACTCTGCTTTCTTACACACATCCCTTGGTGTGGCACCTCTCAGTGTGAGCGCCCACGTCAATTGTTAATCAAAAAAATTGCCCACAAGCCAATCTGAAGGAGGCATTTTTTTCAGTTGAGGTTCTCTCTTCCCACATGACCCCAGCTAGTGTAGAGCTGACAAAAAGACTGCCTACCTGCAGGCTCCAGGATTTCAGTCAAAACTGTGGTGGACAGACAAATGAGCTTTTGACAGCCATGTAGATTTGGTTCCCTTTGCAAAAGAATAGTGCTCTACTGCAGGGGGACAGCTCCTGCTGTCCAGATCACACCTGGCAAAGGAGCTAAGACCTCTAGCCTGCCTAGTAGAAATTCTCTGAAGAGGTGGAAGCTATTTTGAGACTCACCAAATTTAACACTAAAACCCTCCATGGCCTAGCACAGTAGCAGGTAAGGGGGCTTCCACCAAGCCCGACAACCTAAATCCAGTCTCCAGGACTCACATGGTAGAGGCGAGACCTGAATCCTGTAAGTTGCCCTCTGTCCTTCATATAACTTATACAAGTTATCCTCTGCCCTGCATATAACTGTTACAAGTTGTCCTTTGATCATGCTTGTACCATGGCATACATACACACACACACGCACACATAGATACATGCACACACAAAATAAGTAAGCGAGCATATTTTTAAAAAAAAATCTTAAAGCTCTATGGCCCCTCCTTTCAGGGACTCTTGAGCCATCAAGATTGGGAAGGACCTAGGAGTCTGTATTTTTAACAGTCTTGGTTTAGAAATTACAGGACTAATAGAACTGATTTTCACACCAGAAACAGTAGGTGTATTTTGGGCCATAGCCCTATGACTTGGGGCTTAGCCATCTCCTTAGAAGACCCTCAACTTTAACCCCAAATTACTCTCGACTCATTGCTTTTTCTCAAGCCTTAATTGTTCACCTGCTGACCTTTCACTGCCTGATCCCAAACCTTAAGGGATATCTCTGTTCATCAG
Seq C2 exon
GCCCTGAAGCTCAAGTCCATTGTGAGAGGGGACGCCCCATCAAGCTTGGCAGCATCAGGGATGTGTAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860:ENSMUST00000102810:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types