RnoINT0078059 @ rn6
Intron Retention
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3357729-3358806:+
Coord C1 exon
chr3:3357729-3357749
Coord A exon
chr3:3357750-3358475
Coord C2 exon
chr3:3358476-3358806
Length
726 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TAGCCCTCCTGCCTGCCCAGTCT
3' ss Score
3.86
Exon sequences
Seq C1 exon
CCTCATGACCTCAGAGCCCAG
Seq A exon
GTGAGCACCCCGGAGCCCATGTGGAGTTTCTGCTTCACCTCTGCTTCGTGGGATTCTTCCGTACCTTGATCAGACCCATGGGAAGCAGGCGGGGAATGAAAACGTGTTGGCCACTGGGCAGTTCAGGGTTGGGGGCATTTAGCAGTTACCATCCTCCTATATGGTGTGGAACCAAGGCAGGGCAGATCACCCAGGGTTTCGGCCTCACCCTAGCCCAGCACCATGTACACTGTACAGCAGGTCACACTATAGCCTCCAAAGTGGCAGGTACCTATATGGTCTGACCTGACCCCACACCCTAATTATTATTCCCAGTCTCCACAAGGTACTGCCTGATGGGGTCCCCACAATTTCCCTGCACCTCACATGCCCACTTAGGCATAGCCTACCCCAACCCCCCTCAGTGACTCCCAAGGATGTGTTTGGCAGTGACCCCTGCCCCATCTGTGTAGGGGCAAACTGGTATACACAAGGGCTCCTAGGATAAGGTCAGGATACGCTGGGCTAGAGGGACCAGGAAGACCATAGTGGTGATGGCCCAGAGAGGGAAATGGGGCCAGGCTGGCTCCATCCTGGACCAGACTCTGAGCAGGGCCAGGAGGCCAGGCAGACTGGGGTACAGGTAGAAGCCCACAGTTCTGGCCTAGAGAAGGCTGGAGTTCACACTGTAGGTCCTGGCACTTCATGCCACAGGGGGGCCCAGCCATAGCCCTCCTGCCTGCCCAG
Seq C2 exon
TCTCAGATCTCGGTGAACATGGAGGATTGCGAGGACACTCGGGAGGCCAAGGGGCCCTGGGGCACACGGGCTGCGTCTGGCGGTGGCAGCACCCATGGCCGTCACGGGGGCAGTGCTGACCCGGTGGAGCACCCACTACTGCGCCGCAAGAGCCTGCAGTGGGCCCGCAAGCTGAGCCGCAAGAGCAGCAAGCAGGCGGGGAAGGCACCCATGACCACAGACTGGATCACCCAGCAGCGACTCAGCCTGTACCGGCGCTCAGAGCGCCAGGAGCTCTCGGAGCTGGTCAAGAACCGAATGAAGCACCTGGGGCTGCCCACCACTGGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283:ENSRNOT00000023542:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATGACCTCAGAGCCCAG
R:
GTAGCCAGTGGTGGGCAG
Band lengths:
351-1077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]