RnoINT0078068 @ rn6
Intron Retention
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3340148-3340373:+
Coord C1 exon
chr3:3340148-3340222
Coord A exon
chr3:3340223-3340289
Coord C2 exon
chr3:3340290-3340373
Length
67 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
3' ss Seq
CTCTCTCCCGCACACCACAGGTC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GGCAACATCTGGGAGCAGATATTCCATGTGTCTTTCGTCTTGGAGATGATCAACACACTGCCCTTCATCATCACG
Seq A exon
GTGGGTGAGCCCCAGCCCCAAACTCTGCTACCCAAGCGCCACCTGACCTCTCTCCCGCACACCACAG
Seq C2 exon
GTCTTCTGGCCACCTCTCCGGAACCTGTTCATCCCTGTGTTTCTCAACTGCTGGCTGGCCAAGCACGCCCTGGAGAACATGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283:ENSRNOT00000023542:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACATCTGGGAGCAGATA
R:
GATCATGTTCTCCAGGGCGTG
Band lengths:
159-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]