RnoINT0096437 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54266116-54267526:-
Coord C1 exon
chr11:54267284-54267526
Coord A exon
chr11:54266293-54267283
Coord C2 exon
chr11:54266116-54266292
Length
991 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
GATTTGCCGTCTTCCTGCAGGTG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GAACAAGAAACCCTGGCAAATTCTGAAGAGCTGTGTGAATCACTGATTAAATCCAAGATAGAACTGGAAGCCAAAATCAAGGAGCTCTCCAGGCGGGTGGAGGAAGAAGAGGAGATAAATTCTGAGCTGACTGCCAGGGGCCGGAAACTGGAAGACGAATGTTCTGAGTTGAAGAAGGAAATCTATGACCTGGAAGCAATATTGGCGAAGTCAGAGAAGGCGAAGTGTGCCGCGGAGCACAAG
Seq A exon
GTACTCATTCTGTGGTGTTAGGAAGACTTGATTCTTTGGAACCACAAGTGTCCTGTTTATCACCACAGTGGCCTGCAAACTTATAGTGATAGGATCCAAGATCATCAAAAAGGAAAGGGTCTGATGAATTGTATTGTTCCTACTCAGACTTCTGCTTTGAATGCATGGGATCCCTTTAATGTACTGAATGAACTATTATTATTGCACCTAAATGCAATAGCGAGAACTGTTTTCATTGGGTCTCTGAGCATCACGTTTGGAATGGGAATGAAAAGAGTAGCCTTTGCTAAAAGGTAATGTGGGATATTTCTAAATCCCCAGCTTTAGCAATGACTCTGAGTCTGACCTTGAAGCCACCTCCTTAATTCCAGTTAAAGACTTTGGCTTTTCGCTTTAGCTATGGACTTTAGTTTGTGTGTCTACACATGGGGACTGATTAGTGAGGAGTCTGAGTGAAACCTTTGACAAGTAGCTAATCTCCAAGATGAAACTGTCCTTTGCAGATGATTCCACATTCGGTTTTGTATTGCTTCCCACTGGGGAAGCAAACTTTTACCTTCACATGTACTGTTTGCTGGAACTTTTCTTGAACTGCTACACTATGGGGACACCAAGGCATGAGGTGTCAGCTCATGTTCCCCCAGATCCTCAACAGAACTTTAAATTATGACTAATGATATCATTATTATACAGACATAAACTCCAAAAATAGCTTACAAGTTGTGGTTTGGTGATCAGAATATTCTACTTCCTGATCATGGTAGATTAAGGATTCACTTAGTTTTGTGGGAAAAATTGAATTTAGACATTTGTACATGGTATTGATGACATCAAATATTCCATGAGTATTTTGAGATATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTCCTTGGTGCTACACCAGCTTTCCAGGGCTGGCTCTAAGGAAGCCAGATTTGCCGTCTTCCTGCAG
Seq C2 exon
GTGAGGAACCTGACTGAGGAGGTGCACTCTCTACATGAGGACGTCAGTAAACTCACCAGAGCCATGCAGGCTGCTCAGGAGGCCCAGCAGCAGACCCAGGAGCATCTGCACATAGAGGAGGAGAAACTCAGCAACGTGAGCAAAGTAAATCAGAAGCTCAGCCAACAAGTTGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.695
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGCAAATTCTGAAGAGCT
R:
TATGTGCAGATGCTCCTGGGT
Band lengths:
347-1338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]