MmuINT0103387 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:49137587-49138951:+
Coord C1 exon
chr16:49137587-49137829
Coord A exon
chr16:49137830-49138774
Coord C2 exon
chr16:49138775-49138951
Length
945 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
CCTTTGTCATCTTCCCACAGGTC
3' ss Score
12.47
Exon sequences
Seq C1 exon
GAACAAGAAACCCTGGCAAATTCCGAAGAGCAGTGTGAATCACTGATTAAATCCAAGGTAGAGCTAGAAGTCAAAATCAAGGAGCTCTCTAGGCAGGTGGAGGAAGAAGAGGAGATCAATTCTGAGCTGACTGCCAGGGGCCGGAAACTGGAAGATGAATGTTCTGAGTTGAAGAAGGAAATCTACGACCTGGAAGCAATACTGGCGAAGTCAGAGAAGGGGAAGTGTGCAGCGGAGCACAAG
Seq A exon
GTACTCATTCTGTGGTGTCAGGAAGACTTGGTTCTTTGGTACCAGAAGTGTTTTATTTATTAGCACAGCGGCCTGCAAATTTATAGTGATGGGAACTGGAATCATCAAAAAGTAAAGGGTCTGATGAATTGTATAGTTCCTATTCAGACTTCCAGTTTGAATGCATGGGACCCCTTTAATGTCCTGAATGAACTATTATTGCACCCACAATCTAATAGAGTGAACTGTTTTCATTGGGCCTCTGAGCATCACTTTTGGAATGAGACTGAAAATAATAGCCTTTGCTAAAAGGTAATTTGGGATAGTTCTAAATCCCCAGCTTTAGCAATGATTCTGAGCCTGGCCTTGAAGCCATCTCCTTAATTCCAGTTAAAGACTTGGGCTTTTTGCTTTAGCCGTGGGCTTTAGTTTGTGTGTCTACATGTGGATTGACTTGTGAGGAGTCTGAATGAAACCTTTGACAAGCAGCTAATCTCCAAGATGGAACTGTCCTTTGCGGATAGTTCAACAATCCCAGCGGGGAAGCCAACTTTTTCCTTCACATGTACTGTTTGCTGGAACTCTTCTTGAACAGCTACACTATGGGGACATGGAGGCATGATGTGCCAGCACATGTTCCCCCAGATCCTCAATGATCATTAATAATATCATTATACAATAATAAGATCCAAAATAGCTTACAAATTGTGCTTTAGTGACCAGAATATTCCACTTCCTGACCATGGTAGATTAAGGATTTACTTATTTTTGTGGGAAAATTGAATTTAGAGATTTTTTTAAATGGTTACTGATGACATTAGATTGATGACATTAGATATCTCATGAGTATTTTCAGCTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTGTGGTGCTACATCAGCTTTCCAGGGGTGACTCTAATGACATTGCCTTTGTCATCTTCCCACAG
Seq C2 exon
GTCAGAAACCTGACAGAGGAGGTGCACTCTCTAAATGAGGAAGTCAGTAAACTTAGTAGAGTAGTGAAGGATGCTCAGGAGACCCAGCAACAAACCCAGGAGCAACTTCACATAGAGGAGGAAAAACTCAGCAACATGAGCAAAGCAAACCTGAAGCTGGCCCAGCAAATTGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
-Myh15:NM_001166210:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTCTCTAGGCAGGTG
R:
CACATCAATTTGCTGGGCCAG
Band lengths:
342-1287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: