MmuINT0103387 @ mm10
Intron Retention
Gene
ENSMUSG00000092009 | Myh15
Description
myosin, heavy chain 15 [Source:MGI Symbol;Acc:MGI:3643515]
Coordinates
chr16:49137474-49138838:+
Coord C1 exon
chr16:49137474-49137716
Coord A exon
chr16:49137717-49138661
Coord C2 exon
chr16:49138662-49138838
Length
945 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
CCTTTGTCATCTTCCCACAGGTC
3' ss Score
12.47
Exon sequences
Seq C1 exon
GAACAAGAAACCCTGGCAAATTCCGAAGAGCAGTGTGAATCACTGATTAAATCCAAGGTAGAGCTAGAAGTCAAAATCAAGGAGCTCTCTAGGCAGGTGGAGGAAGAAGAGGAGATCAATTCTGAGCTGACTGCCAGGGGCCGGAAACTGGAAGATGAATGTTCTGAGTTGAAGAAGGAAATCTACGACCTGGAAGCAATACTGGCGAAGTCAGAGAAGGGGAAGTGTGCAGCGGAGCACAAG
Seq A exon
GTACTCATTCTGTGGTGTCAGGAAGACTTGGTTCTTTGGTACCAGAAGTGTTTTATTTATTAGCACAGCGGCCTGCAAATTTATAGTGATGGGAACTGGAATCATCAAAAAGTAAAGGGTCTGATGAATTGTATAGTTCCTATTCAGACTTCCAGTTTGAATGCATGGGACCCCTTTAATGTCCTGAATGAACTATTATTGCACCCACAATCTAATAGAGTGAACTGTTTTCATTGGGCCTCTGAGCATCACTTTTGGAATGAGACTGAAAATAATAGCCTTTGCTAAAAGGTAATTTGGGATAGTTCTAAATCCCCAGCTTTAGCAATGATTCTGAGCCTGGCCTTGAAGCCATCTCCTTAATTCCAGTTAAAGACTTGGGCTTTTTGCTTTAGCCGTGGGCTTTAGTTTGTGTGTCTACATGTGGATTGACTTGTGAGGAGTCTGAATGAAACCTTTGACAAGCAGCTAATCTCCAAGATGGAACTGTCCTTTGCGGATAGTTCAACAATCCCAGCGGGGAAGCCAACTTTTTCCTTCACATGTACTGTTTGCTGGAACTCTTCTTGAACAGCTACACTATGGGGACATGGAGGCATGATGTGCCAGCACATGTTCCCCCAGATCCTCAATGATCATTAATAATATCATTATACAATAATAAGATCCAAAATAGCTTACAAATTGTGCTTTAGTGACCAGAATATTCCACTTCCTGACCATGGTAGATTAAGGATTTACTTATTTTTGTGGGAAAATTGAATTTAGAGATTTTTTTAAATGGTTACTGATGACATTAGATTGATGACATTAGATATCTCATGAGTATTTTCAGCTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTGTGGTGCTACATCAGCTTTCCAGGGGTGACTCTAATGACATTGCCTTTGTCATCTTCCCACAG
Seq C2 exon
GTCAGAAACCTGACAGAGGAGGTGCACTCTCTAAATGAGGAAGTCAGTAAACTTAGTAGAGTAGTGAAGGATGCTCAGGAGACCCAGCAACAAACCCAGGAGCAACTTCACATAGAGGAGGAAAAACTCAGCAACATGAGCAAAGCAAACCTGAAGCTGGCCCAGCAAATTGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092009:ENSMUST00000168680:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087025=Fib_alpha=PU(14.3=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTCTCTAGGCAGGTG
R:
CACATCAATTTGCTGGGCCAG
Band lengths:
342-1287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types