GgaINT0119193 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86899271-86900283:-
Coord C1 exon
chr1:86900041-86900283
Coord A exon
chr1:86899448-86900040
Coord C2 exon
chr1:86899271-86899447
Length
593 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CATCTTCATCCTTCACATAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
GAGCAAGACACTCTGGCAGATGCTGAGGAGCGATGCGACTTGTTGATTAAATCCAAGATTCAGCTGGAGGCCAAAGTCAAAGAGCTGACAGAGCGAGTTGAGGATGAGGAAGAGATGAATTCTGAGCTGACATCCAAAAAGAGAAAATTGGAAGATGAATGCTCTGAGCTCAAGAAAGATATTGATGATCTTGAAATAACACTTGCAAAAGTAGAGAAAGAGAAGCATGCTACTGAAAATAAG
Seq A exon
GTACCTGTTGAACTTCGCCATATGTTCAAAAGAGGTCAGGCAAGGATTATCTTTATGACAAGATCTACTGGTTGTCTTGACAGCTTTATACTCTATTACATAGGCCACATTGAAGGATCAGTACACACAGAGTCATTTGAACTTATGAGAGAAAATCTGTTAGTCTGAGTTTCTCTTTTTCTGAAATGAGTTTTGCTGCAACTCTTCTAAAGAATTATGTCTAGTTTTGGCATTCTTAAGTAAACAATTTTCTGCTGTAACCTTGAGTTCTTCCAGCTCTTTTTCTGAGGATCTCCTATTTTTTTTTTCCAGGGAGAATCAAGAGCTGTAATCTACCACAGAAAGAGTAACACTGGGGGGTGGAAAAAAAAAAAAATCAATGCCTTTGATATAGAAAAGTCCACAACAAGAACTGGCACATACTGGCTCCTTTGCTGGCAGTTTGACACAAATTGCCACAAATGGGTGAAGGGAAAGACATCCCTTTCTTTTCAATGTCTTCCTCCATACAAATTCACTAATATTCATTTGAAGCAGATTATGATAATCCCTTTCTTCAGAATCTTACAAATGCATCTTCATCCTTCACATAG
Seq C2 exon
GTGAAAAATCTGACAGAAGAAATGGCGACTCTTGATGAGAACATCAGCAAACTTACTAAGGAGAAGAAGTCCTTGCAGGAAGCTCATCAGCAAGTTCTAGATGACCTTCAAGCAGAGGAAGACAAGGTCAACACACTGAGCAAAGCTAAAGTGAAACTGGAACAGCAAGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=NA C2=0.780
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(40.8=100),PF0157614=Myosin_tail_1=PU(11.2=14.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(29.6=100),PF0157614=Myosin_tail_1=FE(54.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGATGCGACTTGTTGAT
R:
GCTCAGTGTGTTGACCTTGTCT
Band lengths:
358-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]