GgaINT0119193 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90795758-90796770:-
Coord C1 exon
chr1:90796528-90796770
Coord A exon
chr1:90795935-90796527
Coord C2 exon
chr1:90795758-90795934
Length
593 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CATCTTCATCCTTCACATAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
GAGCAAGACACTCTGGCAGATGCTGAGGAGCGATGCGACTTGTTGATTAAATCCAAGATTCAGCTGGAGGCCAAAGTCAAAGAGCTGACAGAGCGAGTTGAGGATGAGGAAGAGATGAATTCTGAGCTGACATCCAAAAAGAGAAAATTGGAAGATGAATGCTCTGAGCTCAAGAAAGATATTGATGATCTTGAAATAACACTTGCAAAAGTAGAGAAAGAGAAGCATGCTACTGAAAATAAG
Seq A exon
GTACCTGTTGAACTTCGCCATATGTTCAAAAGAGGTCAGGCAAGGATTATCTTTATGACAAGATCTACTGGTTGTCTTGACAGCTTTATACTCTATTACATAGGCCACATTGAAGGATCAGTACACACAGAGTCATTTGAACTTATGAGAGAAAATCTGTTAGTCTGAGTTTCTCTTTTTCTGAAATGAGTTTTGCTGCAACTCTTCTAAAGAATTATGTCTAGTTTTGGCATTCTTAAGTAAACAATTTTCTGCTGTAACCTTGAGTTCTTCCAGCTCTTTTTCTGAGGATCTCCTATTTTTTTTTTCCAGGGAGAATCAAGAGCTGTAATCTACCACAGAAAGAGTAACACTGGGGGGTGGAAAAAAAAAAAAATCAATGCCTTTGATATAGAAAAGTCCACAACAAGAACTGGCACATACTGGCTCCTTTGCTGGCAGTTTGACACAAATTGCCACAAATGGGTGAAGGGAAAGACATCCCTTTCTTTTCAATGTCTTCCTCCATACAAATTCACTAATATTCATTTGAAGCAGATTATGATAATCCCTTTCTTCAGAATCTTACAAATGCATCTTCATCCTTCACATAG
Seq C2 exon
GTGAAAAATCTGACAGAAGAAATGGCGACTCTTGATGAGAACATCAGCAAACTTACTAAGGAGAAGAAGTCCTTGCAGGAAGCTCATCAGCAAGTTCTAGATGACCTTCAAGCAGAGGAAGACAAGGTCAACACACTGAGCAAAGCTAAAGTGAAACTGGAACAGCAAGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.780
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(40.8=100),PF0157614=Myosin_tail_1=PU(11.2=14.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(30.2=93.2),PF0157614=Myosin_tail_1=PU(47.8=55.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGATGCGACTTGTTGAT
R:
GCTCAGTGTGTTGACCTTGTCT
Band lengths:
358-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]