BtaINT0097236 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53598169-53599625:-
Coord C1 exon
chr1:53599383-53599625
Coord A exon
chr1:53598346-53599382
Coord C2 exon
chr1:53598169-53598345
Length
1037 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
CTGTTGTCTTCTCCCAGCAGGTC
3' ss Score
10.64
Exon sequences
Seq C1 exon
GAGCGAGAGACCCTGGCAAATGTTGAAGAGCAGTGCGAGCTGCTGATTAAATCCAAGATCCAGCTGGAGGCCAGCGTCAAGGCGCTGTCTGCGCGGGTGGAGGAAGAAGAGGAGATAAATTCCAAGCTGACTGCCAGGGGGCAGAAACTTGAAGATGAATGTTCTGAGTTGAAGAAAGAAATCGATGACCTGGAAACACTATTGGCGAAGTCACAGAAGGAGAAGCATGCTACAGAGCTCAAG
Seq A exon
GTACTTTTTCTATGATGTCAGGAAAGTCTAGATGCCTGAATTCCACACTCCCAATCGGGCTCTGGAACCAGGCTTGCTTTGTTCAAATTAATGAACATAGTGGTCTGCAATTTTATGGGCCTGGAAGTCAGAACTGGCGTCGAATGAGGACCTAATTCAAATTTCCAGCTTGAATTTATGGAACCCTACTTAATCTCCCAAATGAAACATTTTCATTTGTTCTGATCTTATTGCATCTGAAATCTGATAGAAAGAGTAAAACAGTTTTACTGGGCCTCTAAGAATTATTTTTTGGAAGGAGAGGGAGCAGGATGCAGCTTACTTAAAGGTGGTTTGGTATGCATCTTAGTCCCCACCTCGGTTGTTGATTTGGTGTTGACCTTCAGATGTCATTTTAATTCCAGCTAAAACTTTTTTTGTTTTCTTTGAGGTTTTTAACTTGTGTATCTGTATATAGACTGAAGTTAGCTAAGGAATCTGTATCAAACATTTGATTGAAAAAAGCCTCCAGAATAATACCGTAATTTTGGCAGATGATTAAATAGCAACTCTTGTACATCGGTCCCTTTCATAAAAAGCCAATGGGCCTGATATAAATGGCTTCCATTTTTGCCTATTTTATCCGCTAGACCTCTTCTCTAACTGCCACTTTCTTAGGATCTTGAGGCACAACAAGATTAATGTGTGCCCTGAATACTCAAAAGAAAGCTAAATTACCTTTAGTGTGGTGTTCTTGTTATACAACAACATGACACTGAAAACTGGCCGTCTGTGGACCCATGCTGATAATATTTGATTAACCAGAACACCCCATTCCCTGACTATGAGAGATAACAGATCATTCGTGTTTGTGTGTAAAAGAAAATGTGAATTTAGAGTTTTAAAACGTCCAACAGAAATTTGGCTACATGTGATTCCTTACGATGGTGGATATGTCATGAGATTTTGGGTCCTAGAAAAGAGAGGAGATGGCCCTTTGTGTTTATGCCCCTGCTTCCAGGAGCGGTTCTCACGGTGCTGTTGTCTTCTCCCAGCAG
Seq C2 exon
GTCAAGAACCTGCTTGAGGAGGTGGAGTCTCTCAATGAGGATGTGAGCAAACTGCATCGAGCAGCCAGGGCTGCACAGGAGACCCACCAGCAGACCCTGGAGGACTTGCGCAACGAGGAGGAGAAAGTCCACACCCTAAGCAAGGCCAAGTTGACGCTGGAGCAGCGAGTGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.610
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(36.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(26.2=100),PF087025=Fib_alpha=PU(15.5=30.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGAAGAGCAGTGCGAGC
R:
GACTTTCTCCTCCTCGTTGCG
Band lengths:
353-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development