RnoINT0119976 @ rn6
Intron Retention
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7732594-7738214:-
Coord C1 exon
chr14:7738083-7738214
Coord A exon
chr14:7733052-7738082
Coord C2 exon
chr14:7732594-7733051
Length
5031 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CTTTGGATTTTTACTTTCAGTGC
3' ss Score
8.79
Exon sequences
Seq C1 exon
GAGACCGTTTGATATCTGTGAACAGTGTGAGTTTGGAAGGAGTCAGTCACCATGCTGCAGTTGACATTTTGCAGAATGCACCTGAAGATGTGACACTTGTCATCTCCCAGCCAAAAGAAAAACCAACCAAAG
Seq A exon
GTAATGCTGTGCAAGCCCCATAAGTGCCTGGGTGCGTCCGTCGGCCTGGTGTTGTTGATGATGATGGTGGTGGTGATGATGGTGGTGGTGGTAGTGATGATGATGATGATGATGATGATGATGATGATGATGAGAAAGAGTCGAATGTGTAAGGTTGAATGGGTTTTGCTTTGTTCTTGAAAATACTGGATGATGTATTTTCCAGGAGACCGTTTGATATCTGTGAACAGTGTGAGTTTGGAAGGAGTCAGTCACCATGCTGCAGTTGACATTTTGCAGAATGCACCTGAAGATGTGACACTTGTCATCTCCCAGCCAAAAGAAAAACCAACCAAAGGTAATGCTGTGCAAGCCCCATAAGTGCCTGGGTGCGTCCGTCGGCCTGGTAATTGGAGTGAAGCTGTCTGTCTCCTCCCCAGCGCTCAGTCCCACGCCCGTCTAATTGTTGTAATTCGTACATCAGTGTAATGTGCACCTCCAGTAATATGAACAAAACTGGACTTAGTCGTGTAAAGTTGAGGTCACTTACATTCCAGTATCTCAGTGTGTCCCCTCTCCTCTCACTCCCGCAGGAATTAAGAGCTTTTGTCATTACTGATGTGTTCTATAACACTTACCTGTGATGTCCAAAGGTCAGCTTCTGAGAAGGGAAATAATAAACCAGACATGTAGTGAAAGCAAAAAGATCATGTTCTTGCTGCTTTAAAAAAAAAAAAAAAAAAACAGACAATAGGGGCTGGAGAGGTGGCTCAGCAGTTAAGAGCACTGACCGCTCTTCCAGAGGTCCTGGGTTCAATTCCAAGCAGCCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGCTGTGTAATAAATAAATCTTTAAAAACAAAACAGACAGTAGCCTCCAATAGCCTCCATCCTGCCTGCTTCCTCCTGCCTGCTTCCTCCTGCCTGCCTTCCTCACACCAATCCTGAGGACTGGCGAGGACACGCCCTGGAGTATGCAGCCTGTGTGGTAAAGAGAACCAATAGCCAGGCACCAGTCCTCAGCAGTCTCTGCCACCCAGACATACCGCCTTGGCCAAATGCCCTGAGCGCATGAAGCCTAACTCTGAGAGCAAAGGATAAAAGTAATTTATATAATTAGTACATCTCACATACATGTCAAGAACCTAAAATGTCTGTTGTGACTGTCATTATTAATTATAGTTTTCACAGATAGCACAATGCTAGGGGTTGTGTAAGTGACTTTAATCCTTGAGATACTGGACATGTTAAAGAATTTAACACTAGAACTAGTATCGGGCACATACCTGTCTTCCTACCATTGGAGAGGATGAAGCAAGAAATGTCACAGCTTTGAGACCATCTTAGCAGTCATCAGACCATACAGGGCTACGTGCAAGACCCCATCTCAGGAACTTGGGAAAAAAGTAACTAAAAATGCACTGAAAAATGGTTTAGATAGTAAATCTCAGGTATAATTTAGATGCTGGGGTAAGAGTTGCAAAACCAAAGCTTCCTGTGCTGTGCTACGACGGCATAAAGTCTCTTAAATTTTACACCATTTGTCTCTGGCTTACCCCTGTATTTAGTAACTATTAAACGTGAACATATGCATATGTATGAATATATATCATGCATTCTTGTAAGTGTTACATCAGTATGTGTCTGTTATAAAGGCCGCACCCCCCAGCACACTCTTAAGCCTACTTGTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAAGCCTACTTGTTTTATATGAAGGCTGCACTGGTTGGAAATCTGTAGCATGCCTCTGAGTTTCAAGCTGCCAAAATCGCTCTCTTTTTAAAGTCACGTCATTCTCTTTTGCTTTAGGAAGAAAATACATGAGTGAATTCAGAGTAGATTCATTCCCCTAACTCCTCCTTAGAGGATTTTAATTTCCTTCTAACAGATGTTCTATAGAAAATCAATCCATTTGTTCAGAGATACAGTGCATGCGTAGAAAGCACAAAACACAAAGCCCTTACCGTCATGGAAATTAAATCTTTATCAGAGGAGACAAGCACTAAACACCCAGTGAGGAAATGTCTGGTTATAGTTGTGCTATGAGAGGTTAGGGTGATAAAACTGCTCATGATGGAGGAATGTCACCTTAGATGTTGGCCAAAGAAGGATGTCTTGTTTTCCTAAATCGAACTGGGATTATGTAAATTGTTTTCTTCAGGAAGCTAGATTAATTTTTACCATGATGTGTAACTATTCTACAGTCTTACCTTAAAAAAGACAAAACTCAAATAAGTTAGAAGCTTTACCAGCGTATACTCCAGGCTTCCCCTCTCACTTACCTTACTAAGGAGGGCGGGGTTTGTCCTGGTCCGTTTGGTGCTGCTATAACAGACTACCCCCACCCAGTTATCCAGTGGCGGATAACTGTTTCACTTTGTGGCCCATGTTTGCCTAGAATTCACTATGTAACACTGTAGGCATATTTTTTTTTTTTTTTTGCAACCTACTTTTCATAAGGGTTCAGCCTCTCTAGCCCACCACCCAGCAGAGGTGGTGGGAGAGAAAAGTTATTAGGATCTGGGGGAGGTGGACCTGTTCAGCAGTAGTTCTTTGGGGAGAGCTCGATCTTCTTGGGCAGCAGTTCAGTCCCATAGCAAACACCAAATAGAACTCAGCAGCTGCAGACCGGCCCTCTAGGCAGGCAGACACCAGGCAGCTGTAGTTCAATCCTGAAGAGAAACCACCAGGCTCGCCAAGCAGCATGGAGTGAGACCACAGAACCGGCACGCTGCCACAGGGACGTCAGGAGCAGTTCTTGAGTAAGTTTTTCTCAGTGGCAGCGTTACCACAAGTTGAGCTCAACAATGCTATGTAAGGCAAATATGTGTGTCAGTGAAGAATAACAAGGCAGAGCAAACCAATGCTCCGTGCTCGTCTCCCGCTGTCTGTGGAGATGTTTACACTCCTTCATCACAGGTGCTTTCACGTGTTTGTTATATCCAAACACCCTTTCACCTGTGTCTGCATCAGGAAAACAGCCTTTCACGTGTTTGCCTTAGCAAGACATCCCTTGACCTTTGCTCCAGCAGAACGTCATTTGACATAACCAACTTTCCAAAGAACTAGAGTTCCCACTTCATAATGTAGGCTGGCCTGAAACAGCCATCCTCCCGCTTAGGCTCCCGAACCTGGCATTACAGGCATACACCACCATGCTAGGCATGGGGACGGGTGATTTAGACAACGGAGTTATTTCCTGCAGCTGTGAAGACCGGAAACGGAAGGTCAAGGGACTGCATCGTGTGCTGAGGACCTTCTCGCTGAGGCGTCGCGTAGCAGAGCTCGTGCACAGGAGACACCCTGCTCGCACTGGCTGTGACCCATCCATGAGGATGGAGCCTTCTGGTCATAACACCTCCATCCTGAGCTGTGGCAGTCCCCTGCACATGCATCTCAAGGGAACATTCTGATTATAGCAGTTCTCTCTCCGTCTCTCTCTGTCTCTGTCTCTGTCTCTCTCTCTGTGTATGTGTCTCTGTCTCTCTCTGTGTCTCTGTCTGTCTCTGTCTCCCCCCTCTTTCTCTCTGTCTCTCTTTCTCTCTGTGTGTCTCTGTCTCTGTGTCTCTCTCTGTCTCTCTCTCCGTCTCTCTCTGTCTCTCTCTCCGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCCGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTGTGTATGTGTCTCTGTCTCTCTCTGTGTCTCTGTGTCTCTGTCTGTCTCTGTCTCCCCCCATCTCTCTATGTGTGTGTCTCTGTCTCTCTTTCTCTCTGTGTGTCTCTGTCTCTGTCTCTCTCTGTCTCCCCCTCCCCTGCTTTCTCTTTTCTCAGCCAAATATGGGGAAGGAAGAACCTTAGAATTAAACTGCACGACCTTGAGAAATACAAAGATGTCTTTTCATAGACTTATTTCCAAGTTCCTGTAGATTCCTGTCCGTGTGTTATGTCTGTTCCCGAGATGTTTGGTTGTTTTCTGTTGTCAGTTGTTATCAGTGCATAGAGACCGCGATACCTTTTAAATCACAGCTGTCATTTGCACATGTGACTTCGGTACAGACTGTGTGTGTGAGGGTTTGGAGACGGCTCCGGTGCAGCGTCACCTGGAGTCCAAAGCACACAGGCTGAGACTCTGTGGGAGAGACGTGACTCACATTCACCAGGCCCTATGTTTGAGGCCCAGTACTCTCAAAAATAAATGAAATGAGATGGAACAAAAAGACAAGAGCCAAAAAAAGCCCCCCAAAAAAACCCCAAAACCCAAACCAGCCTGCCAAGATACTACGAAGCAAGCAGCGATGTGAATAGGCCCATGGGCTTAGGGAATCAGCTCAGGGGTAGATGATCACAGAGCATGTGTAAGACCCTGGGCTCGGTCCAGTTGTGCTTCAGTCAGTTTAATGAACAGATAATATTTTAGAGACTCAAAGGAACTGTAAGTTATCTCTGAAACCAGGAAAATCTTCAGCGAGGACAATGGAGATGGCAACATCTCACATAGGCTTAAAGCAGAGCCTTGTGAGGAGGCGGAAACAAAAGCAGCTCACAGCCTGCCCTGCGTGTTGTCAGTGTGATTTCTTTGTAAAGTCTTCCTACCTGTCTTCATAAGATCTCCTGCATGTGCACGTGTATGTGTGCATATGTATATATGTATGTGTATGTGAATTTGTGTGCTTGTGTGTGCGCGTGCCTATGCACTATGTATGTATATGCATGTGTATGTGTAAGTTTGTGTGCTTATGTGTATATGTCAGTATGCATTTACAGGCATGTGTATATATGCCTGTGTGTATATATCTGTGTGTAGCAGTGTGTTTACAGGCACGTGTGTCATTGACTTGTGTGTGTCTATGTGTGGGTGTGTGTTTACAGGCACATGTGTCATTGACTTTCTAGTCTCACTTTGGATTTTTACTTTCAG
Seq C2 exon
TGCCTTCTACTCCTGTTCACTTTGCCAATGGAATGAAAAACTACACCAAGAAACCGTCCTCCATGCAGGACAGTGCTATGGACCCATCAGAGGACCAGCCCTGGCCACGGGGCCCTCTGAGGCACGTCCCAGAGAGTCCCTTTGGTCTCTCCTCGGGCCTGCGGGAAGGAAGCCTCAGTTCCCAAGATTCCAGGACTGAAAGTGCCAGCTTGTCCCAGAGCCACGTCAATGGCTTCTTTACCAGCCACTTAGGTGACCGAGGCTGGCAGGAGCCACAGCACAGCAGCCCATCACCACCTGTAACCTCCAAGATCACCGAGAAGACCTTCTCTGACAGTTACCGTAGCCCGGCCAGGCGGCAAGGCACCTGTGATGTGACTGAGCTCCCTGGCTGTGCCGACTCCGACATAGACGATCCCACTTACAGCAGCAGTCAAGACCGTCAGGCACCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061:ENSRNOT00000061162:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(41.7=77.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]