RnoINT0120001 @ rn6
Intron Retention
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7767664-7768905:-
Coord C1 exon
chr14:7768810-7768905
Coord A exon
chr14:7767746-7768809
Coord C2 exon
chr14:7767664-7767745
Length
1064 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATATTTTTATTCACAATTAGTGA
3' ss Score
4.41
Exon sequences
Seq C1 exon
AGCCAGTCCGAAGATACAAAACTTACCACAGCGATCTGTTCAGCACTTCCAGTGAAAGCCCGTCTATTATTTCCTCGGACTCAGACTTCAGGCAAG
Seq A exon
GTAAGAGTCATCCGGTGCGAGCAAAGTACCCTTTCTAAGAAGTAACTATTATTGCTTTTTTAATGCCATTTAATGTTGTGGGATATTTGATTACACTATGAACCCCGAGATTGTGTTACTTACTAGGAAAACCTGATGCTTGGTTGTGGGGCTGCTCAGCCTTACCGCACACCTTTTGTCTAAGAGCTTTCTGCTTGAATATTGTAAACAGGATTAAATAAAGTCAGCTGGAGGTCAAGAGGCAGAGCAAGCAGCCAGTTATCAGGAAGCGAATGTAGGGTGGTTAAGAAAAACCATAGAGAGTAAGAGGGAGTCAGGAGAACAGACAGACAGACAGACAGACAAGGAAGTAGAAGAGAGGGACATTCAGTTTAGAGGGAGTTTTTTTCTTGTTTTTGGGTTTTGGGATTTTATTTGTTTGTATTGCTTTGTTTTGTTTTGTGTGAGAGATGGGCGTTCTTGCTTGGGATGTCAGCTGAGAAGGAAGGCCATCTGGGTGCTTTCTCTGCCTCTCTGAGCCAGCAGCCTCCCACCCCAACATCTGACTCCTGAGTCTTCATTGGTAAAATCAATGATCGAGAGTTTGTTTAAAAAAAAAAAACAAACCCACAACTTAAACAAAAGTTGTCAAAATGTTAAGATTGCAAAATGTTTCCTTTTAAAAGTGTTCTATCACGTAATAAAATTTTTATAAACAGGGACGACATTATTTCATCATATAGGGAGGAAGTCACTGTCTTTAAAACTTATCGTGACTAGCCTGGCATGGTATGGGGAGGCAGAAGCAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAAAGCAAGTTTCAGGACAGCCAGGGCTACACAGAGAAACAACATCTCAGAAAGAAACAAGAAAACAAAGAGCAAGAACAAAAACTAACATGAGCCAACCTCACAAGACGTGTATACCCTGTCACTCATTTGAGACTTTGAGTCGTACAAGTTCCTTTGATGCTAAATGCCTGAGTTTTAGATGAGATTGCTTCCATATTTTTATCACTTCTACTGTTGTTATATTTTTATTCACAATTAG
Seq C2 exon
TGAGAAAAAGCGAAGCTTCCAAGAGGTTTGAATCCAGCAGTGGTCTTCCCGGAGTAGATGACACTGTCCAGTCACGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061:ENSRNOT00000061162:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]