RnoINT0167748 @ rn6
Intron Retention
Gene
ENSRNOG00000024376 | Zfp111
Description
zinc finger protein 111 [Source:RGD Symbol;Acc:620595]
Coordinates
chr1:81035972-81042346:-
Coord C1 exon
chr1:81042220-81042346
Coord A exon
chr1:81038065-81042219
Coord C2 exon
chr1:81035972-81038064
Length
4155 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCTATTCTCTGTTCTTTCAGGAG
3' ss Score
10.54
Exon sequences
Seq C1 exon
GAGGCAGTGACGTTCAGGGACGTGGCCGTGGTCTTCAGTAAGGAGGAGATGGGGCTGCTGGACGCTGCCCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACCTCAGGAACCTCCTGGCAGTGG
Seq A exon
GTGAGGATGGGGCCCTGTGTCCTTGGCGATGTCAGAAGTTCACATCCCGTGTGTGTGTGTTGCTCTCCACTGCTCTCCTTTCAGGTTTACTTAGTTTGTATTTCATGTCTATTTGAGTGTTTGTCTGCATGTGTGTCTGTGCCACACTCACTCGTGATGTCGTGATGCCCACAGAGGCCAGAAGATCCAGGCTGTAACCCCTGGATCTGGAGTTACAGATGGTTGTGAGCCCACCCTGGGTCCTCTGCAAAAGCACCCAGTGCTCTGTATGGCGAGCCACCTCTCCGGCCTCCACTTTATTCTTTAAAACTGCATTTTGTACATAGATGTTGTGCTTTAAATACTATTTTTTTTAACATTTCTTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTATGTGCACTTGCGTATTTATGTTTGTCTTAGTCAATGCCATGACCGTAAAGGAAAGCATTTAGTGGTGCTTGTTTGCCGTTTCCGAGGTTTACTCCACTGTTATCACGGCGGGGAGCGTAGCAGCGTTCAGGCAGACGTGGTAGCAGAGAATTCTACATCCAGATATGTAGGCAGCATCAAGGGAGAGATACTGGGCCTGGCTAGAGTCCTCAAAACTATAAAGCCCACACCGCACAGTCTTCCTCCAACAAGGCCACACCTTCTGATACCTTCGAGACTTGCTACTTCCTAACACATGAGGCTGTGGCGGCCATACCTATTCTGTCCACCATATTCCGTCCCTGGCCCCCATGGACTTGTACCCATAGCAGAATGCACAATGCACTCAGTCCAACCACAAAAGTCCCCAGAGCCTACCACAGTCTCAACAATGATTTCACAGTTCAAAGTTCAGTGTCTCCTGAGTCTCATACGATCTCTTCACTGTAACCCCCTATAAAATCTAAATCAAAGAGCAGATCACAGAATCCCACACACAGGGGCACAGGCTCTCCCAGTGTAGAAGGGGGGGAGCACAGTGAGGAGACACTGAACCAAAGCAAGAAGAGAAACCAGGAGAGCAAACTCCAGACTCTGCACCTCTGTCCGATGTCACAGCGCCCGCAGCTCTCCAGCTCCTTTCAGCGCCGTTGACTGCAGCACACTTCCTCTCTCGGGCTGGCTCCACTCCCTGTTAGTAGCTCTCCTCGACAGGCATCCCACGTCTGTCGCACTTCTGACTTACTGGGGTCTCCAAGGCAATCTTCACCTTCCCAGCTTTACGAAATGGCCTCTCTGGGCCTCCATGCAGGGACACCCTGAACACATGCTTGGCCTTGGAGGCTTTCCTTAGTTTCAGGGATTTTCCACAACTCCTTTCTTATGTGCTTGACCCAGACAAGTAAATACAGTCCCTCAACCCCCAGGACTGCTTCTGGTCCTGTGTCGGGTGCTTCCTCCTCCCCACAACTGAAGAATCCCATTGTATCGCTCCCTGTCTCAGACTGTTGGGCACCCGTTTCACTCTGTAGAATCAGGTTGTTGGTAAGTTATTGTTTTGTGGAATAGTCTTGCTATGTAGACCAGTCTTGGCCAGAAACTTGTGATCCTCCTGCCTCAGCTTCCCAAGCACGAGTATTACAGGTTTATTTAGTCCACTGGGCCTGACTGGAAATCCATCTTCCTAGTCCCTCACACTCCAGCTCTACTGATCTCCTTCCCCACACCCCCTGCTTTCATGTTGAGGTTTGGTCTTGCTGCCTACTGCAGTGTGGGCCCCCAAGAGCTGGAGTCTTCACTTAGACCCCAGTGGCCCAGCTCCCGAGTTATCTCTGTTTGATAAATAAAGATGCCAACAGCCAATAGCTGAGCAGGAAAGACATAGGTGGGGTTTAAGATGCTCAGGCATGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTGCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATGACAGCTACAGTGTACTCATATATAATAAATAAATCTTAAAAAAAAAAAAGATGCTCAGGCTTGGGGCTGGGAAGACAACGATGAGGGGGAAGAGAAGGTGAAGGATGAAGGAGAAGCAGCCATGGGTTAGGTGAGCTCAAGAGAACATGGCCCTGGGGGCTGGCCAACTGGACTTAAGAGCAGTCCAGATGAAACACAGTAAGTAATAACTCAGGGTTGTTGATAGGAAAGTAGGACCTAATAACATAAAGGGTTACTATGCCCAGCTCTTGTGCTTTACAAGGCTTATTGTAAATATAAAGGTTCTGTGTCTTTTTTTTTTTTTTAAAGATTTATTTTGTTTATTTTATGTACAGCATTCTGCCTGCATATGTGACTGCAGGCCAGAAGAGGGCACCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTTTTCTATTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCAGGTTCTGTGTCTTTTATCCGAGAACTAAATAGCCAAGGCAGGGTAGAAACCCTGGGTCAGTATTAAATAATTTCTACAACGGTTTTGGTCTTTGTGTCTCAGCTATTGTCGCTTACTTCTCTCTGCTCAGAATGCTCTTCCCTGTCGGAGTGCAGTGACCTCCTCCCCCTTAACACCCCCCCTCATCTGTCTTCTCAGCAGTCCTCACAGGCCCTTCTCTGAGAGGCAGCGTTACACGCGCCTCCCGCTCACTCTCCCTATTCCGCACTTGCCTCTGCTGGTGTCTAAGCACCACCACACCTGGTACCACAGAGTTAGATTTAGTTGTGGTGACGTACACCAAAATCGGAATGGTTGCACATTTTAGGCAACAGCTCCATGAAGCCTGTGCCCGTTGTGCAGCTGCAGTAGCATCTTTCCCTGTCGCTCACAAGAGCATCCCTCTCCCAACCTGTAGCCCCATCCCTCTGCTTCCTTTTCTCTCTCACACTAACCATGCCAGCCGGATGTGTTGTACAAGCCGCTGAGCTAACTGCATCCCGGGAACAGGGATCTTCTAAGGCACCTGTTTCTGTTTTCAGCTTCAGCAGTTGTCCCGTTCATCGTAGCTGTTTCCTGTCCTTATAGTTTGGTCTTGGTTTATCTTCTTGTTTCTTTGGTGTACCTCTCAAGTAGTGTTATAAGCTTTGTTATTCTGTCAGGACGTCTGTGTTAGGTTGGCAGCTGAGGTCTGCCCTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCGCTCTACCACTGAGCTAAATCCCCAACCCCCGAGGTCTGCCTTCTTTATTGAGCCCCTTCCCCTGCTCCTTTGTGAGTCTGGCCTTCTTGGGTTGGAAAACAGGCATTTAAAGAAACCCATTCCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCTAAGGCCCTGGGTTTGGTCCTCAGCTCCTGGGGAAAAAAAAAAAAAGAAACCCATTCGCTCCTGCCCTTCTAGGCTGCCTCCCCCTCCCCGCAGCCACCCTTCCCACTCCCTCCCGCCTCCAGAAAAATCCCTTCCCCAATCAGTGTAGCTGTAGCTCTCTCCTCATAGTTTCCAAGCACGCTTGTGAGATGAAGTTATTCCAGTCCCCTCCTACTTGTGTTCTCTGAAACACAGTAACTTCCTCAAACTGGACATCATCATTTGGGCCTTTGCTGTTTATCTCTTCCTCAGCCTCCAAAGCTCCCCACGCCTTCCCATTACACTCTCATAATTTGGATGAGTCAGGTTCGGACCAGGCAGGTCTGGTTTTCTCTGCTCCCGACAGTCTCATGGTCAGTTGTGGCTGGTTCTTGAATGTGCGTCCTGTTTGTTCTAGATCTTTCTTCCTCAGAACCCTTGTATGTTCATCTTGGATGCTGGTCTCCAGTTAATGTTTCCAGGGAGAAATAACGTCCCCGTCCTTGCTGATATCACCTTCTATTCTCTGTTCTTTCAG
Seq C2 exon
GAGGCCAGAGTCCAAATAAGATGAAGACCGTTGATGCAACAGGAATAAGGTGCCTTTTACTGGGGCAGCTTCTGTACTGGGAAATAACAGGCCACGATGCCAACAAACTGGCCAGAGCTCCGGAAGCTGTAGTCAACACTCAAGGAAAGGGTTCTCACTTCCTGGAGCAAGGCCACTCCTCCTGCCACAGGGAAGCAGAGGAGCCTCCCCGGGCTTCTGAGGATGACAGTTCTCTCGACAGTCTGACACGTGACCATTCCAGCACTACTGAAAATCAGGAATTTCTGTCTGGGAGAGCCCAGGGGTCTTGGTGTAAAACACATCTTAGGAAAAGACAGAACCATCAGAAACACTGTCTGCAGACTCTGATGAAAAACAAGCCAGAGCTGTTGACTCAGCATTCCCCTGTACAAAGAACACAGGAGGACAGCAGGCATAGCTCTAGCGTCCCCATTCAACAAAGTGTTCATCCAGGAAGAAAGCGCTACTGGTGTCATGAGTGTGGCAAGGGTTTCAGTCAGAGCTCAGCTCTCCAGACTCACCGGAGAGTGCACACGGGGGAGAAGCCCTGCAGGGACAACAGCTGTAGGAAAAGCTTCAGTCGTAGCTCTGGTCTTAGCATCCACCGCCAAGTACACACTGGAGAGAGACCTTACCGGTGTAAAGTGTGTGGGAAGGGTTTCTTGCGGTGGTCACACCTCCAGGCCCACGAGAGAATTCACACAGGAGAGAAGCCATATAAGTGTGGAGAGTGCGGTAAACGCTTCAGCTGTATTTCAAACCTTCACACCCACCAGAGATTCCACAGCAAGGAGAAACCATACAAGTGTGACAAGTGTGGGAAGTGCTTCAGCTTGAACTTCAACCTTCACATTCATCAGCGGGTCCACACAGGAGAGAAACCATATAAATGTGAAGAGTGTGGGAAGTGTTTCAGCTTGAGCTTCAACCTCCACAGCCATCAGCGGGTCCACACAGGAGAGAAGCCATATAAATGTGAAGAGTGTGGGAAGTGTTTCAGTTCAGCCTCAAGTTTCCAAAGACACCGGCAGATCCATATAAAAGAGAAGACACTTCATCGCGATGTGTGTGGAAAGGGCAGCAGCCGGGACTCGAATCTTCAGACTCACCAGAGAGTGCACATACAGGAGAAGCCCTATCGGTGCAACAGCTGTGGGAAGAGCTTCCGCTGTAGCATGGATCTCAACATCCACCGCCGAGTACATACTGGAGAGAAACCTTACAAGTGTGAGGTGTGTGGGAAGGGCTTCAATTATTTGTCACACCTCCAGGCCCACGAAAAAATTCATGCAGATCAGAAGCCATATAAGTGTGAATACTGTGGCAGACGCTTCAGCTATAGTTCAAACCTTCACACCCACCAGAGAGTTCACACGGGAGAGAAACCCTATAAATGTGAGGAGTGTGGGAAAAGCTTCAGTCTAGCGTCTAGTCTACAGGCTCATCAAAGAGTCCAAACTGGCAAGAAGCCATTCAAATGCAATGCATGCCAAAAGCGATTCAGTCAGGCCTGGAACCTCCAGGCCCACCAGAGAGTGCACACTGGGGAGAAGCCCTACAAGTGTGACACGTGTGGGAAAGCCTTCGGCCAGAGGTCCAGTCTTCAAATCCATCAGAGAATTCACACTGGGGAGAAGCCATTCAAATGTGAGGAGTGTGGGAAGGAGTTCAGCTTGAATTCAGGGCTTACTGCTCACCGGAGGGTCCACACGGGAGAGAAGCCCTATGAATGCACAGAGTGTGGGAAAGGCTTCAGTCTTGCCTCAAGTCTACGAACTCATCAGCGAATTCACACCGGCGAGAAACCCTTCCAATGCAATGAGTGCCAGAAGAGGTTCAGTCAGGTCTCACACCTCCAGTCCCACCAGAGGGTTCACACAGGGGAGAAGCCTTACAAATGTGACACCTGTGGGAAGGCCTTTAGTCAAAAGTCTGGTCTCCAAGTCCATCGGAGAATTCACACTGGGGAGAAGCCGTTCAAGTGTGAGGAGTGTGGGAAGGAATTCATCTGGAGCTCAGGGCTTAGTGCTCACCGGAGGGTCCACACAGGAGAAAAAACCCTGCACGGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024376:ENSRNOT00000051473:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.202
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF102764=zf-CHCC=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134511=zf-trcl=WD(100=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]