BtaEX0000404 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98889247-98895204:-
Coord C1 exon
chr11:98895061-98895204
Coord A exon
chr11:98893419-98893541
Coord C2 exon
chr11:98889247-98889363
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTTCCTTTTTACAGTTA
3' ss Score
10.26
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAGTGGCACCGCGGCGCGGTGGCTGCCGGAAGCGATTCCGCAGAGGTTGACGGGATCGTGCTGATGTGGCCCCCCCTTCCCCCGCCCCGTCCCGGGATGTCGGAAGAAACCCGACAGAGCAAATTGGCTGCGGCCAAGAAAAAG
Seq A exon
TTAAGGGAGTATCAGCAGAAGAACAGCCCTGGTGTTCCTGCAGGAGCTAAGAAAAAAAGAAAGATCAAGAATGGCAGTAGCCCTGAGACAACCACTTCTGGTGATTGTCCGTCACCTGAGGAT
Seq C2 exon
GCGCCCAAAGACCGCGCCGCTCCTGTTACACCGTCTGCTGATGACACCGTGTCACCTGGCGGTGTCCCTTCCCCCAGTGCTAGTCCCCCCCGTGTCACTAGCATGGCATCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317-'1-3,'1-0,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCGCAGAGGTTGACGG
R:
GAGTTGATGCCATGCTAGTGACA
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development