MmuEX0021415 @ mm10
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32288253-32296721:+
Coord C1 exon
chr2:32288253-32288396
Coord A exon
chr2:32292093-32292215
Coord C2 exon
chr2:32296626-32296721
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTCCTTTCCACAGCTG
3' ss Score
11.74
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CCTTGTAGAGAAGCCGTAGCTTCCGGAAGCAGTTTCGCGGTGGCTGCCGGGATCGTGGTGATGTGGCCCCCCCGCTTCCCCCCTCCCCGCCCCGGGATGTCGGAAGAAACCAGGCAGAGCAAATTGGCTGCGGCCAAGAAAAAG
Seq A exon
CTGAGAGAGTATCAGCAGAAGAACAGCCCGGGTGTTCCTGCAGGAGCAAAGAAGAAGAAAAAGATTAAAAATGGCCATAGCCCAGAGAGACCCACTGCCAGTGACTGTCAGTCACCAGAGAAT
Seq C2 exon
GTGCCCACAGACCATATTGCTCCTGCACCGCCAACCGCTGCTACTGACACTATGTTTCTTGGTGTCACCCCTTCCCCTGATGCTGACCTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'3-10,'3-8,11-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.993 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTAGAGAAGCCGTAGC
R:
TGAGTGAGGTCAGCATCAGGG
Band lengths:
239-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types