MmuEX0021415 @ mm9
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32143773-32148915:+
Coord C1 exon
chr2:32143773-32143916
Coord A exon
chr2:32147613-32147735
Coord C2 exon
chr2:32148835-32148915
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTCCTTTCCACAGCTG
3' ss Score
11.74
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CCTTGTAGAGAAGCCGTAGCTTCCGGAAGCAGTTTCGCGGTGGCTGCCGGGATCGTGGTGATGTGGCCCCCCCGCTTCCCCCCTCCCCGCCCCGGGATGTCGGAAGAAACCAGGCAGAGCAAATTGGCTGCGGCCAAGAAAAAG
Seq A exon
CTGAGAGAGTATCAGCAGAAGAACAGCCCGGGTGTTCCTGCAGGAGCAAAGAAGAAGAAAAAGATTAAAAATGGCCATAGCCCAGAGAGACCCACTGCCAGTGACTGTCAGTCACCAGAGAAT
Seq C2 exon
ATTAAGGACATTCTGAAGGTGCTGGTGTCCGACCTTAACCGTTCCAATGGGGTCTCACTCCCCCCATTAGACAAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'2-9,'2-8,3-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.996 C2=0.622
Domain overlap (PFAM):
C1:
NO
A:
PF0125413=TP2=FE(45.5=100)
C2:
PF0125413=TP2=PD(17.0=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTAGAGAAGCCGTAGC
R:
CTTCCTCTTGTCTAATGGGGG
Band lengths:
225-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: