GgaEX6015048 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:4995598-4997274:+
Coord C1 exon
chr17:4995598-4995666
Coord A exon
chr17:4996738-4996860
Coord C2 exon
chr17:4997194-4997274
Length
123 bp
Sequences
Splice sites
3' ss Seq
TATCCTTTTTTCCCCCGCAGCTG
3' ss Score
12.64
5' ss Seq
AACGTGAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
TGGCCCGGGCGCGGGGCGGACATGGCGGACGGCAGCAGGCAGAGCAAGCTGGCGGCGGCCAAGAAGAAG
Seq A exon
CTGAAGGAGTACCAGCAGAAGAACAGCCCTGGAGCCACTGCGGGAGCCAAGAAGAAACGAAAAGCTAAAGAAGGAAGTAGGCCTGAGACTCCCACAAACGATGACCGGCAGTCTCCAGAGAAC
Seq C2 exon
ATTCAGAACATTCTGAAGGTGCTGGTGTCAGACCTTAACCGCTCCAATGGGGTAGCCATACCCTCATTGGACAAAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881-'0-1,'0-0,2-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGCAGAGCAAGCTG
R:
CTTTTGTCCAATGAGGGTATGGCT
Band lengths:
114-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]