DreEX6008900 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1417557-1432828:-
Coord C1 exon
chr5:1432739-1432828
Coord A exon
chr5:1425172-1425288
Coord C2 exon
chr5:1417557-1417652
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGTTTTGATCTGCAGCTG
3' ss Score
9.61
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
TGATCTGATGACGTGGTGTCGTTCGCTCAGCTGCGCGAGAGGATGGCGGACCAGAACAGGCAAATCAAACTCGCTGCAGCTAAGAAAAAG
Seq A exon
CTGAAGGAGTTTCAGCAGAAGACGATTCCATCCACGGGAAGTGCCGGACCAAAGAAGAAGAGGAAGGTTAAAGGAGATCAGACAGACGCTCCTGCTGACCGCCGCTCTCCAGAAAAT
Seq C2 exon
GAGCGTGTGGATGTCTCGCAGGAGCTGGAGGAGGCCGGCGCTGAACACGTCTCTAACCCTGCTTCTGCTATTAACACTGATAACTCTGCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-'0-4,'0-2,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGGTGTCGTTCGCTC
R:
GCGGTGCAGAGTTATCAGTGT
Band lengths:
175-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]