RnoEX0039169 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11317183-11326047:+
Coord C1 exon
chr3:11317183-11317459
Coord A exon
chr3:11321154-11321276
Coord C2 exon
chr3:11325952-11326047
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTCTCTTTTCCACAGCTG
3' ss Score
11.49
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CGCTCCCGCCTCGCGACAGCGTGACCACGCCTCCCTGTCAGTCATCATTCTCATCAACCAATGGGCTTGGAGAAGGTAGGTCACGCCGGGTTTCCGAGCGTCCTAGTGAAGCTCTGCACCCGCCTTCTCTGGCTCTTGTTGAGGAGTCGTAGCTGCCGGAAGCAGTTTCGCGGTGGCTGCCGGGATCGTGGTGATGTGGCCCCCCCGCTTCCCCCCTCCCCGCCCCGGGATGTCGGAAGAAACCAGGCAGAGCAAATTGGCTGCGGCCAAGAAAAAG
Seq A exon
CTGAGAGAGTATCAGCAGAAGAACAGCCCGGGTGTCCCTGCAGGAGCAAAGAAGAAGAAAAAGATTAAAAATGGCCATAGTCCAGAGAGAACCTCTGCCAGTGATTGTCAGTCAGCAGAGAAT
Seq C2 exon
GTGCCCACAGACCACACTGCTCCTGCACCACCAAGTACTGCTGCTGCCACTATGTTTCTTGGTGTCGTCCCTTCCCCCGATGCTGATCTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-'0-4,'0-1,4-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.976 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCTTGTTGAGGAGTCG
R:
AATGAGATCAGCATCGGGGGA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]