GgaEX6015048 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5627681-5632257:+
Coord C1 exon
chr17:5627681-5627728
Coord A exon
chr17:5628800-5628922
Coord C2 exon
chr17:5632214-5632257
Length
123 bp
Sequences
Splice sites
3' ss Seq
TATCCTTTTTTCCCCCGCAGCTG
3' ss Score
12.64
5' ss Seq
AACGTGAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATGGCGGACGGCAGCAGGCAGAGCAAGCTGGCGGCGGCCAAGAAGAAG
Seq A exon
CTGAAGGAGTACCAGCAGAAGAACAGCCCTGGAGCCACTGCGGGAGCCAAGAAGAAACGAAAAGCTAAAGAAGGAAGTAGGCCTGAGACTCCCACAAACGATGACCGGCAGTCTCCAGAGAAC
Seq C2 exon
ATTCATGAAGCTGAGGATCGTAAAAACACTTTGGATGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881-'1-4,'1-0,2-4=AN
Average complexity
A_C2
Mappability confidence:
89%=100=86%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.993 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGGCAGAGCAAGC
R:
CTGTTCTCATCCAAAGTGTTTTTACG
Band lengths:
82-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]