BtaEX0000779 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44353619-44356402:+
Coord C1 exon
chr22:44353619-44353763
Coord A exon
chr22:44355559-44355709
Coord C2 exon
chr22:44356149-44356402
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCTCTCTTCAACAGATA
3' ss Score
11.54
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
Exon sequences
Seq C1 exon
GGATCATTTTTATGACAATGTATCTGAATGGCGGGAGATCTATGACAGTAAGGAGCCACACAATGCTAAATTTCCAGCACCAATGGATACAAGGCTAAATGAACTACAGAAAATAATCATTCTTCGGTGCTTAAGACCTGATAAG
Seq A exon
ATAACTCCAGCTATAACTAATTATGTAACTGACAAACTAGGGAAAAAGTTTGTAGAGCCTCCACCATTTGATTTGACAAAGAGTTATTTGGATTCAAATTGCACCATTCCCTTAATTTTTGTGTTGTCTCCAGGAGCAGATCCCATGGCCA
Seq C2 exon
GCCTCCTAAAATTTGCAAATGATAAAGCTATGTCTGGAAATAAATTTCAAGCTATTTCACTGGGACAGGGACAAGGACCCATTGCAACAAAAATGATTAAAGCAGCAATAGAGGAAGGAACTTGGGTTTGCCTACAGAATTGTCACCTCGCTGTCTCCTGGATGCCCATGTTAGAAAAAATATGTGAAGATTTTTCTCCTGAAGCCTGTAACTCATCCTTTAGGCTTTGGCTCACAAGTTACCCATCTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
PF0302810=Dynein_heavy=FE(7.0=100)
C2:
PF0302810=Dynein_heavy=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGGGAGATCTATGACAGT
R:
GGCAAACCCAAGTTCCTTCCT
Band lengths:
249-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development