MmuEX6040086 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26868774-26872475:+
Coord C1 exon
chr14:26868774-26868918
Coord A exon
chr14:26871719-26871869
Coord C2 exon
chr14:26872222-26872475
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTTCTCTATTCCTAGATA
3' ss Score
9.87
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGAGCATTTTTGTAATTACATATATTTGTGGGAGGAAATCTATGACAGCAAAGAGCCGCACAATATGAAATTTCCAGAACCAATGGATAAGACGCTGAACGAACTGCAGAAAATAATAATTCTTCGATGTCTAAGGCCTGATAAG
Seq A exon
ATAACCCCAGCTATAACAAATTATGTAACTGACAAGCTAGGGAAAAAATTTGTAGAGCCTCCACCATTTGACTTGACAAAGAGTTACCTGGATTCAAATTGCACCATCCCTTTAGTTTTTGTGCTATCTCCTGGAGCAGATCCTATGGCCA
Seq C2 exon
GCCTGCTGAAATTTGCAAATGATAAATCTATGTCTGGAAATAAATTTCAAGCTATTTCACTGGGACAAGGGCAAGGACCAGTTGCATCAAAAATGATTACAGCAGCAATAGAAGAAGGAACTTGGGTTTGTCTACAAAATTGTCATCTTGCTGTCTCCTGGATGCCCACATTAGAAAAAATATGTGAAGATTTTTCGCCTGAAACCTGCAATCCAACGTTTAGGCTTTGGCTTACAAGCTATCCATCTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'62-70,'62-66,64-70=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(17.2=100)
A:
PF0302810=Dynein_heavy=FE(17.9=100)
C2:
PF0302810=Dynein_heavy=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAACCAATGGATAAGACGCT
R:
AATGTGGGCATCCAGGAGACA
Band lengths:
244-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types