GgaEX1001311 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:8894558-8896265:-
Coord C1 exon
chr12:8896121-8896265
Coord A exon
chr12:8895115-8895265
Coord C2 exon
chr12:8894558-8894811
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCTATTTAACCCTTTACCAGATC
3' ss Score
6.7
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAGTAATATCACTGAAAATATAGGTGAATGGCAAAAAATTTATGATAGCAAAGAGCCACAAAGCTTTCCGTTACCAGAACCATTGAATGATGCATTAAATGAATTACAGAAGATGATAATTCTTCGGTGCTTAAGGCCAGACAAG
Seq A exon
ATCGGTCCAGCTATAGCAACATTCGTAACTGAGAAACTGGGGAAGAAATTTATAGAGCCACCACCTTTTGATCTAACAAAAAGTTACTCAGATTCAAATTCTACAATCCCTCTCATATTTGTGCTATCTCCAGGAGCAGATCCCATGTCCA
Seq C2 exon
GCCTTCTGAAATTTGCAAATGACAAAAACATGGTTGGAAGTAAATTTCAGTCCATCTCATTAGGACAAGGCCAAGGACCTATTGCTACAAAAATGATCCAAGAAGGAATGGAGGAAGGAACGTGGGTTTGTTTACAAAACTGTCATTTAGCTGTCTCCTGGATGCCAATGCTGGAGAAAATATGTGAAGAGTTTAGCAGTGAAAAATGTCATCCGTTCTTCAGACTATGGCTTACAAGTTACCCTTCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'63-67,'63-66,64-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
PF0302810=Dynein_heavy=FE(7.0=100)
C2:
PF0302810=Dynein_heavy=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAAAGCTTTCCGTTACC
R:
TGGCATCCAGGAGACAGCTAA
Band lengths:
258-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]