DreEX6079849 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19588893-19591551:-
Coord C1 exon
chr23:19591407-19591551
Coord A exon
chr23:19591148-19591298
Coord C2 exon
chr23:19588893-19589146
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTCATTTTTGTCAGATC
3' ss Score
9.37
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GGAGAGCTTTATTAAGAGTCCTGAGAGTTTCCTGCCCATTTATGATAGCAAGGAGCCATTCAACACAGCTTTGCCCAAGCCCTGGTGTGATAAACTCAACGAACTTCAAAAGATGATCATTTACAGATGTCTTAGACCTGACAAA
Seq A exon
ATCGAACCAGCAATCAGCAAGTTTGTGACTGACAAACTGGGAAAGATATTTGTCGAACCCCCTCCTTTTGACCTGAGTAAGAGCTACAATGACTCCAACTGCACCATTCCACTGGTGTTTGTTCTCTCTCCTGGAGCAGATCCTATGGCTA
Seq C2 exon
GTCTGCTGAAATTTGCCAATGACAAGAACATGGGTGGCTCCCAATTTAAATCTATTTCCCTGGGACAAGGCCAGGGTCCCATAGCCGTGAAGTTGATACGCTCAGCCATGAAGGATGGCACCTGGGTGTGCTTACAGAATTGCCACCTGGCCGTGTCCTGGATGTCCACTCTGGAGAAGATTTGCGAAGACCTCAGCCCTGACACATGCCATCCAAACTTTCGTCTTTGGCTTACCAGTTACCCATCACCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'66-66,'66-65,67-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
PF0302810=Dynein_heavy=FE(7.4=100)
C2:
PF0302810=Dynein_heavy=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGAGTTTCCTGCCCAT
R:
CATCCTTCATGGCTGAGCGTA
Band lengths:
244-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]