RnoEX6054480 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2512091-2516130:+
Coord C1 exon
chr16:2512091-2512235
Coord A exon
chr16:2515367-2515517
Coord C2 exon
chr16:2515877-2516130
Length
151 bp
Sequences
Splice sites
3' ss Seq
CATGTCTTCTCTATTCCCAGATA
3' ss Score
9.79
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGAGCATTTTTGTAATCACATACGTGAGTGGGAGGATATTTACAACAGTAAAGAGCCGCACAATATGAAACTTCCAGAATCAATGGACAAGACGCTGAACGAGCTGCAGAAAATAATAATTCTTCGCTGTCTAAGGCCTGATAAG
Seq A exon
ATAACCCCAGCTATAACAAATTATGTGACTGACAAACTAGGGAAAAAATTTGTAGAGCCTCCACCATTTGACTTGACAAAGAGTTATTTGGATTCAAATTGCACCATCCCTTTAATTTTTGTGCTGTCTCCTGGAGCAGATCCAATGGCCA
Seq C2 exon
GCCTGCTGAAATTTGCAAATGATAAATCTATGTCTGGAAATAAATTTCAAGCGATTTCACTGGGACAAGGGCAAGGACCAGTAGCAACAAAAATGATTACAGCAGCAATAGAAGAAGGAACTTGGGTTTGTCTACAAAACTGTCATCTTGCTGTCTCCTGGATGCCCACATTGGAAAAAATCTGTGAAGATTTTTCACCTGAAATCTGCAATCCAACCTTTAGGCTTTGGCTCACAAGCTATCCATCTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'73-75,'73-74,74-75=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(18.3=100)
A:
PF0302810=Dynein_heavy=FE(19.0=100)
C2:
PF0302810=Dynein_heavy=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGCTGTCTAAGGCCTGA
R:
AGCCAAAGCCTAAAGGTTGGA
Band lengths:
257-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]