MmuEX6040086 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27681960-27685661:+
Coord C1 exon
chr14:27681960-27682104
Coord A exon
chr14:27684905-27685055
Coord C2 exon
chr14:27685408-27685661
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTTCTCTATTCCTAGATA
3' ss Score
9.87
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGAGCATTTTTGTAATTACATATATTTGTGGGAGGAAATCTATGACAGCAAAGAGCCGCACAATATGAAATTTCCAGAACCAATGGATAAGACGCTGAACGAACTGCAGAAAATAATAATTCTTCGATGTCTAAGGCCTGATAAG
Seq A exon
ATAACCCCAGCTATAACAAATTATGTAACTGACAAGCTAGGGAAAAAATTTGTAGAGCCTCCACCATTTGACTTGACAAAGAGTTACCTGGATTCAAATTGCACCATCCCTTTAGTTTTTGTGCTATCTCCTGGAGCAGATCCTATGGCCA
Seq C2 exon
GCCTGCTGAAATTTGCAAATGATAAATCTATGTCTGGAAATAAATTTCAAGCTATTTCACTGGGACAAGGGCAAGGACCAGTTGCATCAAAAATGATTACAGCAGCAATAGAAGAAGGAACTTGGGTTTGTCTACAAAATTGTCATCTTGCTGTCTCCTGGATGCCCACATTAGAAAAAATATGTGAAGATTTTTCGCCTGAAACCTGCAATCCAACGTTTAGGCTTTGGCTTACAAGCTATCCATCTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'57-60,'57-59,58-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
PF0302810=Dynein_heavy=FE(7.0=100)
C2:
PF0302810=Dynein_heavy=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAACCAATGGATAAGACGCT
R:
AATGTGGGCATCCAGGAGACA
Band lengths:
244-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: