GgaEX1001311 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8647180-8649444:-
Coord C1 exon
chr12:8649286-8649444
Coord A exon
chr12:8647737-8647887
Coord C2 exon
chr12:8647180-8647433
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCTATTTAACCCTTTACCAGATC
3' ss Score
6.7
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGCTAAAAATGAAATAGAACGTCAAGAGTTTATGTTCTTATTAACTGCTGGTGTGGGTCTCAAGAATAAATACAAGAATCCAGATCCGTCTTGGCTACCAGACAAGAGCTGGGATGAGCTATGTCGTGCAAGTGAAATCCCAGCTTTGAAAGAACTGAG
Seq A exon
ATCGGTCCAGCTATAGCAACATTCGTAACTGAGAAACTGGGGAAGAAATTTATAGAGCCACCACCTTTTGATCTAACAAAAAGTTACTCAGATTCAAATTCTACAATCCCTCTCATATTTGTGCTATCTCCAGGAGCAGATCCCATGTCCA
Seq C2 exon
GCCTTCTGAAATTTGCAAATGACAAAAACATGGTTGGAAGTAAATTTCAGTCCATCTCATTAGGACAAGGCCAAGGACCTATTGCTACAAAAATGATCCAAGAAGGAATGGAGGAAGGAACGTGGGTTTGTTTACAAAACTGTCATTTAGCTGTCTCCTGGATGCCAATGCTGGAGAAAATATGTGAAGAGTTTAGCAGTGAAAAATGTCATCCGTTCTTCAGACTATGGCTTACAAGTTACCCTTCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.6=61.1)
A:
PF0302810=Dynein_heavy=FE(7.0=100)
C2:
PF0302810=Dynein_heavy=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTGCTGGTGTGGGTCTCA
R:
CAAACCCACGTTCCTTCCTCC
Band lengths:
248-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]