BtaEX0001678 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61967850-61972369:+
Coord C1 exon
chr19:61967850-61967997
Coord A exon
chr19:61970271-61970439
Coord C2 exon
chr19:61972311-61972369
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATCATGTCTTTATGGCTCAGATG
3' ss Score
6.36
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATTTCGCATCAAGAGTATCACGTGAGTGGTGTTGTATTCCCTGATCCCTCTGGGGAGTCATACACAATGATAGTGCTCTTCTTCCTTCTGGCATTTGACACTCTGCTCTATTTGACATTAACATTATATTTTGAGCACATTTTGCCTG
Seq A exon
ATGAAAGTGGCCAGCGGCATTCACCACTGTTTTTCCTGAAGTCTTCCTTTTGGTCCCAACACAAAAACACTCACCATGAAGTCTTTGGGAATGAAATGAATTCTGAGCTCTCCTGCGATGATTCTTTCGAGCCAGTGTCTCCAGAGTTCCACAGAAAAGAAGCCATAAG
Seq C2 exon
AATCAGAAATCTTAGAAAAGAATATAAAGGAAAACCTGAAAAAGTAGAAGCATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCATCAAGAGTATCACGTGA
R:
TGCAATGCTTCTACTTTTTCAGGT
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development