HsaEX0000247 @ hg19
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]
Coordinates
chr17:67193205-67210992:-
Coord C1 exon
chr17:67210845-67210992
Coord A exon
chr17:67197641-67197809
Coord C2 exon
chr17:67193205-67193263
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATTGTATCTTAATTAATTAGATA
3' ss Score
3.88
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
ATTACACACCTGGATAATTACTTAAGTGGTGTTATTTTTCCTGATCCCTCTGGGGATTCATACAAAATGATAGCCACTTTTTTCATTTTGGCATTTGATACTCTTTTCTATTTGATATTCACATTATATTTTGAGCGAGTTTTACCTG
Seq A exon
ATAAAGATGGCCATGGGGATTCTCCATTATTTTTCCTTAAGTCCTCATTTTGGTCCAAACATCAAAATACTCATCATGAAATCTTTGAGAATGAAATAAATCCTGAGCATTCCTCTGATGATTCTTTTGAACCGGTGTCTCCAGAATTCCATGGAAAAGAAGCCATAAG
Seq C2 exon
AATCAGAAATGTTATAAAAGAATATAATGGAAAGACTGGAAAAGTAGAAGCATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.206 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(13.0=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACCTGGATAATTACTTAAGTGG
R:
TGCAATGCTTCTACTTTTCCAGTCT
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)