BtaEX0002856 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009897 | AGPS
Description
Bos taurus alkylglycerone phosphate synthase (AGPS), mRNA. [Source:RefSeq mRNA;Acc:NM_001206719]
Coordinates
chr2:19424596-19511252:-
Coord C1 exon
chr2:19510422-19511252
Coord A exon
chr2:19433086-19433175
Coord C2 exon
chr2:19424596-19424686
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATATTTTTCTGCTTATTAGGCA
3' ss Score
6.72
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CCCGGGACTGCTCGAACTCACCTGCTTGACAGGTGTCAGCGGTCTGGGGTGTGACTGTGGAGGCGGGCGGCCGCGGTGGGCGGGAGCTGAGGATAAGTAGCTCCAGGCGCATGGCACCCGCCGCCCAGTCGCCGCGGTGGCTGCCGGGATGCGCCGCAGCGAATGGTCGCGCCGGGCGCCGCTCTGAGTGACCTTTCACCCGCGCCCAGCGGCCCCGGGCGGTGGCACAAGGCGGAAGCCATGGCGGAGGCGGCGGCTGCGGCGGGCGGGACGGCCGCGGGCGCGGGCTCCCGGTCCACAACGGACCGGGACCGGGACCGGGATCCGGAGCGGGACCGCGCCGGGCGGAGGCTGCGAGTTCTTTCAGGCCATCTGCTGGGCCGGCCGCAGGAAGCTCTGAGTACCAACGATTGCAAAGCGCGGAGAACCGCGGCGACCGGCACGGCGGCGCCCACTGCCACTCCCGCCGCGCAAGAGTCGGGCACCATCCCCAAGAAGCG
Seq A exon
GCAAGAAGTTATGAAATGGAATGGATGGGGATATAATGATTCCAAGTTCATCTTCAATAAGAAAGGACAAATTGAGTTGACTGGGAAAAG
Seq C2 exon
GTACCCTCTTAGTGGCATGTCATTGCCAACTTTTAGAGAGTGGATCCAAAATACCCTTGGAGTAAATGTGGAGCATAAAACTACCTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009897_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAACGATTGCAAAGCGC
R:
GCTCCACATTTACTCCAAGGGT
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development