DreEX6034712 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1625272-1637817:-
Coord C1 exon
chr9:1637564-1637817
Coord A exon
chr9:1627161-1627250
Coord C2 exon
chr9:1625272-1625362
Length
90 bp
Sequences
Splice sites
3' ss Seq
CGTTATTTTTTGTTTTCTAGGCA
3' ss Score
10.25
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CATGCCGGGACGCGGTTGCTCATCTCCGCCTTCAGCCTCCATCAGCCGCCGCTGACCTCTGACAGCAAACACGGAAGCAGCATGGCGTCCAACGGCAGCAGCAGCAGCAGCAGATCACAGCACAGGCTGAGGATCATCGCCGGACACTTGCAGAAGCGCACAGAAGATCAACACACCAGTCTCTCCGCGCAAAACTGCAGAGCCGAGTCTCCCGGATCCAGCCCGAGCCGCCAGACACCGGTGCCCAGGAGGAG
Seq A exon
GCAGGAAATCATGAAGTGGAACGGCTGGGGTTACAGCGACTCAAGATTTCTGTTTAATAAAAAGGGTCAAGCAGAGTTCACAGGCAAACG
Seq C2 exon
GTATCGGTTGAGTGGGTTGATTCTGCCGAGTCTGAAGGACTGGTTTGAAGGGACGTTTGGAGCCAGTTTACAGCATAAATCTCCTGCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.067 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGAAGCGCACAGAAGAT
R:
GGCTCCAAACGTCCCTTCAAA
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]