DmeEX6010878 @ dm6
Exon Skipping
Gene
FBgn0033983 | CG10253
Description
The gene Alkyldihydroxyacetonephosphate synthase is referred to in FlyBase by the symbol DmelADPS (CG10253, FBgn0033983). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is 2R:14929703..14934861. Its molecular function is described by: oxidoreductase activity; alkylglycerone-phosphate synthase activity; FAD binding. It is involved in the biological process described with: oxidation-reduction process; ether lipid biosynthetic process; lipid biosynthetic process. 6 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 06-18 hour embryonic stages.
Coordinates
chr2R:14931152-14933118:-
Coord C1 exon
chr2R:14932855-14933118
Coord A exon
chr2R:14932402-14932488
Coord C2 exon
chr2R:14931152-14932340
Length
87 bp
Sequences
Splice sites
3' ss Seq
AAATAATATTTAAAAAACAGACA
3' ss Score
0.91
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCCAAGTTTTTTTTCGGACGCCGCAAAAAAAGGAATCACATCAATTATCGATTTTGTGCACATGAAAAGCGTTTCTGCAATTACCTAGAAATAATTGCTCAAATTCCCTCAAAAGTCAAGTGCACAAATCGGCGAAATAATGGCAGCCAAGCGGAATGCGGTGACCACGGAAGCTCCGGAATCGTCGGCGCCCGGCGAAGGTACCGCCCTCGCCCTCGACTCCCGCCTGTCCAAGCGCGTGGAGAGCGTCATCCCCAAGAAGCG
Seq A exon
ACATGAGGCGCTTAAGTGGTTCGGATGGGGATATAACGACTCGCAGTTTTATGGTAAGGATGGTATCATCTGTTTTCGCGGTGAAAA
Seq C2 exon
ATATCCCCTCGGTGGATGCGAGCTGCCCAGTTTCACCAAGTGGGTGGAGAAGAAGTTCGATCTGCGAGTGGATACCACCAAGCAGTATCCCCAGTTGCCACGAACGTATCCGCGGCCAGTGGAGAACGCACCCTTCCTGCACGAACTGAAGGGCACCACCCAGGTGGATTACTCTGCGGAGGGAATCGATCGGTTGGTGCGGTGCCATGGCCAGACCCTCAACGATATATACAGCCTGTGGCACCACAAGTTTCGACGGATACCCGATTTGGTGGTGTGGCCACGTTGCCACGATGAGGTAGTCCAGTTGGTGCGGCTGGCCAACAAGCACAATGTGATGCTGGTGCCTTTTGGTGGTGGAACGAGTGTATCGGGAGCCATCACCTGTCCGCAGAACGAGAGCCGAATGATCTGCGCCCTGGACACCTCTCAGATGAATCGACTATTGTGGCTAAACCGGGAGAATCTCACCGTATGCTTTGAGTCCGGCATTGTGGGTC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0033983-'2-6,'2-5,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0156518=FAD_binding_4=WD(100=36.0),PF0291314=FAD-oxidase_C=PU(47.8=32.7)
Main Inclusion Isoform:
FBpp0086558
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0292772, FBpp0292773, FBpp0292774
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATAATGGCAGCCAAGCGGAA
R:
CCACTTGGTGAAACTGGGCAG
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)