GgaEX6042238 @ galGal3
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
NA
Coordinates
chr7:16857512-16872364:-
Coord C1 exon
chr7:16872165-16872364
Coord A exon
chr7:16860566-16860655
Coord C2 exon
chr7:16857512-16857602
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTATGTTTTCCCCCTTCTAGGCA
3' ss Score
10.79
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGTGCCATGGCGGCGGCGGCGGAGGAGGCGGCGGGAAGCGGCGGCGGGTCCCCGGCCTCCGCCCGGCGGCGGCTGCGCATCATCTCCGGGCACCTGCGGGGCTCGCCGCGGGCCGCGGGGCAGGAGGCGCTCTCCCCGAGCCCCTGCAAGGCGCAGGGCGGCTCCGCCGGGCCGGCCGCCGGCTCCATCCCCAAGAAGCG
Seq A exon
GCAAGAAATTCTGAAGTGGAATGGATGGGGATATAATGACTCCAAATTCATATTCAATAAGAAGGGTCAAGCAGAATTCACAGGAAAGAG
Seq C2 exon
GTACAGATTAGGTGGTATGGTATTACCAACTTTTAAAGAATGGATAGAAAGAACCTTTGGAGCAAGTCTGGAGCACAAAACTACCTCTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'0-3,'0-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCATCTCCGGGCAC
R:
TGCTCCAAAGGTTCTTTCTATCCA
Band lengths:
189-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]