MmuEX0004284 @ mm10
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75832177-75854290:+
Coord C1 exon
chr2:75832177-75832511
Coord A exon
chr2:75851494-75851583
Coord C2 exon
chr2:75854170-75854290
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATATATTTTTTCTCACTAGGCA
3' ss Score
9.79
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AGTCGCCGCGGTGACTGCCGGGATGCGCCGCAGCGAATGGTCGCGCGGGGCGCCGCTCTGAGTGACCTTTCACCCGAGCCCAGCGGCCTCGGGCGGCGGCACAAGGCGGAAGCCATGGCGGAGGCGGCGGCGGGCGAGGCGGGCGCGAGCGAGCGGGACCCAGACGCGGGCCGCGCGCGCCGGCGGCTGCGGGTTCTGTCGGGCCATCTGCTGGGCCGGCCCCAGGAGGCTCCGAGTACCAATGAGTGCAAAGCGCGGAGAGCCGCGTCGGCGGCCGGGGCGTCGCCCGCCGCTACTCCTGCCGCACCAGAGTCGGGCACCATCCCCAAGAAGCG
Seq A exon
GCAAGAAGTTATGAAATGGAATGGATGGGGCTACAATGATTCCAAGTTCTTATTGAATAAGAAGGGCCAGGTTGAGCTGACTGGGAAAAG
Seq C2 exon
ACATCCATAAATCCTAGTGAAGCACCTCCTTCTATTGTGAATGAAGATTTCCTTCAGGAACTTAAAGAAGCTCGGATTTCCTACTCACAGGAAGCAGATGATCGTGTGTTTAGAGCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=0.050 C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000047232fB352
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGAGTACCAATGAGTGC
R:
TCCGAGCTTCTTTAAGTTCCTGA
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types