RnoEX0007968 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62648447-62668245:+
Coord C1 exon
chr3:62648447-62648664
Coord A exon
chr3:62666948-62667037
Coord C2 exon
chr3:62668155-62668245
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTTTCCTCATTAGGCA
3' ss Score
9.23
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
ATGGCGGAGGCGGCGGGAGAGGCGGGCGCGAGCGAGCGGGACCCAGACGCGGTCCGCGCGCGTCGGCGGCTGCGGGTTCTGTCGGGCCATCTGCTGGGCCGGCCCCAGGAGGCTCCAAGTACCAATGAGTGCAAAGCGCGGAGAGCCGCGTCGGCGGCCGGGGCGTCGCCCGCTGCTTCTCCCGCCGCGCCGGAGTCGGGCACCATCCCCAAGAAGCG
Seq A exon
GCAAGAACTTATGAAATGGAATGGATGGGGCTATAATGATTCCAAGTTCTTACTGAATAAGAAGGGCCAGGTTGAGCTGACTGGGAAAAG
Seq C2 exon
GTACCCTCTTAGTGGCTTGGCTTTACCAACTTTGAAAGACTGGATCCAAAACACCCTTGGAGTAAATCTGGAGCATAAAACTACCTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547-'0-5,'0-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=0.032 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000002111fB815
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGGCTCCAAGTACCAA
R:
CCAAGGGTGTTTTGGATCCAGT
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]