GgaEX6042238 @ galGal4
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr7:15256386-15271809:-
Coord C1 exon
chr7:15271039-15271809
Coord A exon
chr7:15259440-15259529
Coord C2 exon
chr7:15256386-15256476
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTATGTTTTCCCCCTTCTAGGCA
3' ss Score
10.79
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGGCTCTCGACAATCAAAGCCCAAGCTACGAGACGTCTCCCGTAAGGCCTGCGCTTTCCCGGCTGCTCACGGCCCCCAACGAGCCCCGGAGCGGCGCGGCGAGAGCCGCAATGACACGAGGGCAGCAGCGCCTTTAACCGCAGGCCGCGCTCCTCCCACCCGCGCGCTGCTCTCCGCTAGCGGCGGGAAGGGTCCGCTAGTCGATGCCGGCCGCCCGCCGGGCAGGGCTCGGGGAGCGCGGGGCCGCGCCTTCCGTCCGCCTGACCCCTCACCCGGCAGCGCTCCGTGGCACAACACGGAAGTGCCATGGCGGCGGCGGCGGAGGAGGCGGCGGGAAGCGGCGGCGGGTCCCCGGCCTCCGCCCGGCGGCGGCTGCGCATCATCTCCGGGCACCTGCGGGGCTCGCCGCGGGCCGCGGGGCAGGAGGCGCTCTCCCCGAGCCCCTGCAAGGCGCAGGGCGGCTCCGCCGGGCCGGCCGCCGGCTCCATCCCCAAGAAGCG
Seq A exon
GCAAGAAATTCTGAAGTGGAATGGATGGGGATATAATGACTCCAAATTCATATTCAATAAGAAGGGTCAAGCAGAATTCACAGGAAAGAG
Seq C2 exon
GTACAGATTAGGTGGTATGGTATTACCAACTTTTAAAGAATGGATAGAAAGAACCTTTGGAGCAAGTCTGGAGCACAAAACTACCTCTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'1-6,'1-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000015032fB4833
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCATCTCCGGGCAC
R:
TGCTCCAAAGGTTCTTTCTATCCA
Band lengths:
189-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]