BtaEX0002857 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009897 | AGPS
Description
Bos taurus alkylglycerone phosphate synthase (AGPS), mRNA. [Source:RefSeq mRNA;Acc:NM_001206719]
Coordinates
chr2:19405630-19416930:-
Coord C1 exon
chr2:19416851-19416930
Coord A exon
chr2:19415481-19415561
Coord C2 exon
chr2:19405630-19405755
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTCTTTTGCAACAGAAT
3' ss Score
9.33
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGGAACAAGTGTTTCGTATGGCCTGATGTGTCCTGCAGATGAGACAAGAACAATTATTTCTTTAGACACTTCACAAATG
Seq A exon
AATCGTATCCTCTGGGTTGATGAAAACAATCTGACAGCTCATGTAGAGGCTGGCATAACAGGACAAGAATTGGAAAGACAG
Seq C2 exon
CTTAAAGAAAGTGGTTATTGTACAGGTCATGAACCAGATTCCCTGGAATTCAGCACTGTGGGAGGATGGGTATCTACTCGAGCGTCAGGCATGAAGAAGAATATCTATGGCAATATTGAGGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009897_MULTIEX1-2/12=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.048
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(18.2=100)
A:
PF0156518=FAD_binding_4=FE(18.2=100)
C2:
PF0156518=FAD_binding_4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTATGGCCTGATGTGTCCT
R:
TTCTTCTTCATGCCTGACGCT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development