MmuEX6102239 @ mm10
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75858899-75866872:+
Coord C1 exon
chr2:75858899-75858978
Coord A exon
chr2:75861934-75862014
Coord C2 exon
chr2:75866747-75866872
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTCCTTTGTAACAGAAC
3' ss Score
9.7
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGGAACAAGTGTGTCCTATGGCTTGATGTGTCCTGCAGACGAGACAAGAACAATAATTTCTTTGGACACTTCACAAATG
Seq A exon
AACCGGATTCTCTGGGTTGATGAGAACAATCTGACAGCTCACGTAGAGGCTGGGATAACAGGACAAGATTTGGAAAGACAG
Seq C2 exon
CTTAAAGAAAGTGGTTATTGTACAGGTCATGAACCGGACTCCCTGGAATTCAGCACCGTGGGAGGATGGATATCTACTCGAGCGTCAGGCATGAAGAAAAATATCTATGGCAATATTGAGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410-'14-11,'14-10,17-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.048
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(18.1=100)
A:
PF0156518=FAD_binding_4=FE(18.1=100)
C2:
PF0156518=FAD_binding_4=FE(28.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAAGTGTGTCCTATGGCT
R:
ATGCCTGACGCTCGAGTAGAT
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types