GgaEX1007029 @ galGal4
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr7:15215011-15259529:-
Coord C1 exon
chr7:15259440-15259529
Coord A exon
chr7:15248285-15248365
Coord C2 exon
chr7:15215011-15220064
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTGCTTCTTAACAGAAT
3' ss Score
8.33
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GCAAGAAATTCTGAAGTGGAATGGATGGGGATATAATGACTCCAAATTCATATTCAATAAGAAGGGTCAAGCAGAATTCACAGGAAAGAG
Seq A exon
AATCGGATTCTCTGGATAGATGAGAAGAACTTAACAGCATGTGTGGAAGCTGGCATTATTGGACAAGATTTGGAAAAACAG
Seq C2 exon
AAGCAGCTGCTCAACCCAGCCTCTTGCTAAAGGAAAGCAGCTAGGAGACAGATGAGATTACACCAAGGAGTACTTCTCTGTGCTGAAGCATTAGGTATGTAACAGATTTGTAACCAGCGAATACTTAAAGCACAAATGTAGGCTTTGATCAAAAAAGACGATGCAAGGTCAAACTGTTTCTAAAAACTCAGTCTCCCACCTTAATAACTATTGTAAAATTGTAAACAATTGAGCTGTTCTGAGTTGTATTTGCATTGCTGGGATTATCTTAAATTAATCGTAGGTCAGTCACTGTAAGTTTTGTACAATGGACACTTCTCACTGTATGTTAATAACAGGTTTGTAACAAAACTTTGCCTTCATCTGTACTGCAGTCCTAGTGTGTATGGTTTTGCTCCTGTTTTTGTTTATTTTGCAGAAATGCAAAATATCTTTTTCAGTAAAAGAAAAAAAAAATTTTGGCTATTCAAGTGAAACTGCCCAGCACTGTCTTTTGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236_MULTIEX1-6/14=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0156518=FAD_binding_4=FE(18.3=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGTGGAATGGATGGGGA
R:
GCTTCAGCACAGAGAAGTACTCC
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]