GgaEX1007029 @ galGal3
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
NA
Coordinates
chr7:16844235-16851005:-
Coord C1 exon
chr7:16850926-16851005
Coord A exon
chr7:16849410-16849490
Coord C2 exon
chr7:16844235-16844360
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTGCTTCTTAACAGAAT
3' ss Score
8.33
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GGGGAACGAGTGTCTCTCCCCCCCTTGAATGCCCTGAAGAAGAAAAAAGAACAATTGTCTCTCTGGATACATCACAAATG
Seq A exon
AATCGGATTCTCTGGATAGATGAGAAGAACTTAACAGCATGTGTGGAAGCTGGCATTATTGGACAAGATTTGGAAAAACAG
Seq C2 exon
CTTTCTGAAAGTGGCTTCTGTACAGGCCATGAACCGGACTCCATGGAGTTCAGCTCACTAGGAGGATGGGTAGCAACACGAGCATCGGGCATGAAGAAAAACATCTATGGAAACATTGAAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'10-13,'10-11,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(18.3=100)
A:
PF0156518=FAD_binding_4=FE(18.3=100)
C2:
PF0156518=FAD_binding_4=FE(28.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGAGTGTCTCTCCCCC
R:
TTTCTTCATGCCCGATGCTCG
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]