HsaEX0003144 @ hg19
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:327]
Coordinates
chr2:178307135-178326746:+
Coord C1 exon
chr2:178307135-178307214
Coord A exon
chr2:178310274-178310354
Coord C2 exon
chr2:178326621-178326746
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTCCTTTGCAACAGAAT
3' ss Score
9.01
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGGAACAAGTGTTTCATATGGCCTGATGTGTCCTGCAGATGAGACAAGAACAATTATTTCTTTGGACACTTCACAAATG
Seq A exon
AATCGAATTCTCTGGGTTGATGAGAACAATTTGACAGCTCATGTAGAGGCTGGCATAACAGGACAAGAGTTGGAAAGACAG
Seq C2 exon
CTTAAAGAAAGTGGTTATTGTACAGGTCATGAACCAGATTCCCTGGAGTTCAGTACTGTAGGAGGATGGGTATCTACTCGCGCATCAGGCATGAAGAAGAATATCTATGGCAATATCGAGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_MULTIEX1-6/16=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.048
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(18.2=100)
A:
PF0156518=FAD_binding_4=FE(18.2=100)
C2:
PF0156518=FAD_binding_4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATATGGCCTGATGTGTCCTG
R:
TCTTCTTCATGCCTGATGCGC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)