DreEX6034715 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1611827-1619102:-
Coord C1 exon
chr9:1619023-1619102
Coord A exon
chr9:1615633-1615713
Coord C2 exon
chr9:1611827-1611952
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTAATCATTATTTGTTTAGAAC
3' ss Score
5.19
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTGGTACGAGTGTGTCCAGTGCTCTAGAGTGCCCTCAAGAGGAGACGCGTTGCATTGTTTCTTTAGACACGTCTCAGATG
Seq A exon
AACCGAATATTGTGGATCGATGAGAAGAATCTGACGGCTCATGTGGAGGCAGGAATCATCGGGCAGGATCTGGAGAGACAG
Seq C2 exon
CTGAATGAGCGAGGCTACTGTACGGGTCATGAGCCAGACTCTATGGAGTTCAGTTCTCTGGGCGGCTGGGTGGCCACACGGGCATCAGGCATGAAGAAGAACATCTACGGCAACATAGAGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(18.2=100)
A:
PF0156518=FAD_binding_4=FE(18.2=100)
C2:
PF0156518=FAD_binding_4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTGTGTCCAGTGCTCTA
R:
TCTTCTTCATGCCTGATGCCC
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]