RnoEX0007971 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62675182-62686657:+
Coord C1 exon
chr3:62675182-62675261
Coord A exon
chr3:62681497-62681577
Coord C2 exon
chr3:62686532-62686657
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTATTTTCCTTTGTAACAGAAC
3' ss Score
8.75
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGGGAACGAGTGTATCCTATGGCCTGATGTGCCCTGCAGATGAGACAAGAACAATAATTTCTTTGGATACTTCACAAATG
Seq A exon
AACCGGATTCTCTGGGTTGATGAGAACAATCTGACAGCTCACGTAGAGGCTGGGATAACAGGACAAGATTTGGAAAGACAG
Seq C2 exon
CTTAAAGAAAGTGGTTATTGTACAGGTCATGAACCGGACTCCCTAGAATTCAGCACTGTGGGAGGATGGATATCTACTCGAGCATCAGGCATGAAGAAGAATGTCTACGGCAATATTGAGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547-'15-14,'15-10,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.048
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(18.1=100)
A:
PF0156518=FAD_binding_4=FE(18.1=100)
C2:
PF0156518=FAD_binding_4=FE(28.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTGTATCCTATGGCCTGA
R:
CTTCATGCCTGATGCTCGAGT
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]