BtaEX0002978 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004092 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr11:102885119-102897137:-
Coord C1 exon
chr11:102896937-102897137
Coord A exon
chr11:102892796-102892927
Coord C2 exon
chr11:102885119-102885208
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTCCTCTCGTTCCAGCTC
3' ss Score
10.69
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AGATCTATCACACCACCTTCGACTGGCCCCCCGAGTCGGAAATCCAGAACCGACTGATGGTGCCTGCAGGCATCTTCGAGGGGGAGACGGCGCGGAAGCTGCTCGAGTATCACAGGAACATCGTCAGGATCCTCCCCTCGTACCCCAAGATCCTGAAGGTCATCAGCGCCGACCAGCCCTGCGTGGACGTCTTCTACCAGG
Seq A exon
CTCTGACCTACGTCCAAACCAGCCATCGATCCAATGCCCCGTTCACCCCAAGGGTGCTGCTTTGCGGGCCTGTGGGCAGCGGGAAAAGCCTGCAGGCCGCCCTTCTGGCCCAGAAATACGGCCTCATCAACG
Seq C2 exon
TCTGCTGTGGGCAACTGCTCAAAGAAGCCGTGGCGGACAAGTCCAAATACAGCGATTTGATCCAGCCATTTTTCGAGAAGGAGATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004092_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(28.6=73.5)
A:
PF0040617=ADK=PU(13.4=53.3)
C2:
PF0040617=ADK=PD(52.8=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCACACCACCTTCGACTGG
R:
TATTTGGACTTGTCCGCCACG
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development