GgaEX0020075 @ galGal4
Exon Skipping
Gene
ENSGALG00000013404 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr17:6689790-6694713:-
Coord C1 exon
chr17:6694516-6694713
Coord A exon
chr17:6691638-6691769
Coord C2 exon
chr17:6689790-6689879
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTGTCCTCTTCTAGCTC
3' ss Score
11.9
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGGTGTACCATACGACCTTTGACTGGCCAAATGATGTGCAGATACAGCAACGTTTGGTGAAACCAGATCTGTCTGAGGAGGAGATGTCAAAACAACTGCTGGAATACCATAGGAACTTCCCCGGGGTGTTCCAGATCTACCAAAAAATTCTGAGATCAATCAATGCAGACCAGCCTTGTGTGGATGTCATATCACAAG
Seq A exon
CTCTTACCTATGTCCAAACCCAGCACCGATCAGCTGCCCCTTTTACTCCACGTATTCTCTTTTGTGGCCCCCCAGGCAGTGGGAAGAGCCTGCAGGCAGCACTAATAGCTCAGAAATACAGCGTTGTCAACA
Seq C2 exon
TTTGCTGTGGGCAACTGCTAAAGGAAGCTGTTGCAGACAAGACAAAACTTGGAGAACTCGTTAAGCCTTATATTGACAACGGATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404-'11-12,'11-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(28.6=74.6)
A:
PF0040617=ADK=PU(22.4=53.3)
C2:
PF0040617=ADK=FE(28.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGCCAAATGATGTGCA
R:
AGGCTTAACGAGTTCTCCAAGT
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]